Table 2.
Classification and statistics of repetitive sequences in A. glycines genome.
| Number of elements | Length occupied (bp) | Percentage (%) | |
|---|---|---|---|
| Retroelements | 28,668 | 6,712,406 | 2.07 |
| SINEs | 360 | 46,389 | 0.01 |
| LINEs | 16,566 | 3,797,719 | 1.17 |
| L2/CR1/Rex | 3,938 | 527,095 | 0.16 |
| R1/LOA/Jockey | 4,066 | 1,013,422 | 0.31 |
| R2/R4/NeSL | 266 | 135,965 | 0.04 |
| RTE/Bov-B | 3,708 | 670,462 | 0.21 |
| LTR elements | 11,742 | 2,868,298 | 0.89 |
| BEL/Pao | 1,549 | 645,867 | 0.2 |
| Ty1/Copia | 511 | 45,737 | 0.01 |
| Gypsy/DIRS1 | 9,603 | 2,111,781 | 0.65 |
| DNA transposons | 155,128 | 35,538,877 | 10.97 |
| hobo-Activator | 47,453 | 8,934,762 | 2.76 |
| Tc1-IS630-Pogo | 10,587 | 1,590,714 | 0.49 |
| MULE-MuDR | 7,734 | 1,571,244 | 0.48 |
| Tourist/Harbinger | 1,226 | 258,780 | 0.08 |
| Rolling-circles | 8,754 | 2,032,965 | 0.63 |
| Unclassified | 101,684 | 41,190,113 | 12.71 |
| Small RNA | 1,165 | 944,693 | 0.29 |
| Satellites | 182 | 49,842 | 0.02 |
| Simple repeats | 325,384 | 14,970,350 | 4.62 |
| Low complexity | 48,488 | 2,423,603 | 0.75 |
| Total | 103,860,962 | 32.06 |