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. 2025 Mar 8;7(1):lqaf016. doi: 10.1093/nargab/lqaf016

Table 2.

Number of non-redundant terminators (No. Term.) per genome accession used for training

Data source Species Phylum Genome No. GC Avg.
      Accession Term. (%) Pre.
[6, 54] Bacillus subtilis 168 Bacillota AL009126.3 1800 42.9 0.88
[55–57],            
[23, 58, 59] Bacillus subtilis 168 Bacillota NC_000964.3 4872 42.9 0.72
[57] Caulobacter vibrioides NA1000 Pseudomonadota CP001340.1 341 66.2 0.93
[60] Clostridioides difficile 630 Bacillota CP010905.2 1646 28.6 0.84
[61] Dickeya dadantii 3937 Pseudomonadota NC_014500.1 1786 55.5 0.49
[62] Escherichia coli BW25113 Pseudomonadota CP009273.1 1095 50.1 0.81
[7, 57, 58, 63],            
[8, 37, 64] E. coli str. K-12 substr. MG1655 Pseudomonadota NC_000913.3 4139 50.1 0.62
[65] Pseudomonas aeruginosa PAO1 Pseudomonadota NC_002516.2 805 65.6 0.89
[66] Staphylococcus aureus JKD6009 Bacillota LR027876.1 978 32.4 0.81
[67] Staphylococcus aureus NCTC 8325 Bacillota NC_007795.1 566 32.4 0.90
[68] Streptococcus pneumoniae D39V Bacillota CP027540.1 747 39.1 0.94
[69] Streptococcus pneumoniae TIGR4 Bacillota NC_003028.3 1810 39.1 0.67
[7071] Streptomyces avermitilis MA-4680 Actinomycetota BA000030.4 2006 69.7 0.63
[71, 38] Streptomyces clavuligerus ATCC27064 Actinomycetota CP027858.1 1583 71.6 0.62
[71] Streptomyces coelicolor M145 Actinomycetota NC_003888.3 1308 71.1 0.73
[7172] Streptomyces griseus NBRC13350 Actinomycetota NC_010572.1 2724 71.2 0.76
[71, 73] Streptomyces lividans TK24 Actinomycetota CP009124.1 1999 71.2 0.59
[71] Streptomyces tsukubaensis NBRC108819 Actinomycetota CP020700.1 1283 70.8 0.55
[57] Vibrio natriegens ATCC 14048 Pseudomonadota CP009977.1 905 44.7 0.97
[57] Vibrio natriegens ATCC 14048 Pseudomonadota CP009978.1 257 44.1 0.90
[74] Vibrio parahaemolyticus RIMD 2210633 Pseudomonadota NC_004603.1 1852 44.7 0.67
[75] Zymomonas mobilis ZM4 = ATCC 31821 Pseudomonadota CP023715.1 2040 45.7 0.54

There is a total of 36 542 terminator sequences. Avg. Pre. shows the average precision obtained during cross-validation as in Fig. 5.