The title molecule was studied by single-crystal X-ray analysis to determine its molecular structure and investigate the interactions present. Theoretical (obtained by DFT) and experimental parameters were compared. In addition, Hirshfeld surface analysis and molecular docking studies were performed for the title compound as a ligand and the SARS-Covid-2 (PDB ID:8BEC) protein, specifically the Omicron variant.
Keywords: crystal structure, Hirshfeld surface, DFT studies, molecular docking, benzyloxy, biphenyl carboxylic acid
Abstract
In the title compound, C20H16O3, intramolecular C— H⋯O hydrogen bonds are observed. The dihedral angles between the aromatic benzoic acid ring and the two adjacent aromatic rings are 26.09 (4) and 69.93 (8)°, while the dihedral angle between the aromatic rings connected by the C—O—C—C [torsion angle = −175.9 (2)°] link is 89.11 (3)°. In the crystal, inversion dimers linked by pairs of O—H⋯O hydrogen bonds generate R22(8) ring motifs. These dimers are further linked by C—H⋯π interactions, forming molecular sheets along (010). The molecular structure was optimized by density functional theory (DFT) at the B3LYP/6–311+ G(d,p) level and the bond lengths, angles and torsion angles were compared with experimental values obtained by X-ray diffraction. The HOMO and LUMO were calculated, the energy gap between them being 4.3337 eV. Further, the intermolecular interactions were quantified using Hirshfeld surface analysis and fingerprint plots and energy frameworks were generated. The two-dimensional fingerprint plots indicate that the major contributions to the crystal packing are from H⋯H (39.7%), H⋯C (39.0%) and H⋯O (18.0%) interactions. The energy framework calculations reveal that the dispersion energy (Edis= 201.0 kJ mol−1) dominates the other energies. Molecular docking studies were carried out for the title compound as a ligand and the SARS-Covid-2 (PDB ID:8BEC) protein, specifically the Omicron variant, was used as a receptor giving a binding affinity of −7.6 kcal mol−1.
1. Chemical context
The biphenyl moiety forms an important intermediary of compounds having profound pharmacological activities (Jain et al., 2017 ▸). Biphenyl-derived drugs are found to exhibit anti-cancer, anti-diabetic, anti-inflammatory and various therapeutic activities, and represent a well-known rigid core moiety in pharmacological applications. Biphenyl carboxylic acid derivatives have been described as a new class of anti-resorptive drugs with potential therapeutic benefits for preventing and treating diseases associated with osteoclast activation such as osteoporosis, cancer-induced bone disease and Paget’s disease (Idris et al., 2009 ▸; van’t Hof et al., 2004 ▸) and exhibit anti-hypertensive activity (Sharma et al., 2010 ▸). Biphenyl-2-carboxylic acid and biphenyl-4-carboxylic acids exhibit different levels of activity in cell toxicity tests and inhibit the tubulin polymerization process (Mukherjee et al., 2016 ▸; Mahale et al., 2014 ▸). Hydrazide-hydrazone-containing biphenyl compounds demonstrate potential anti-microbial activity (Deep et al., 2010 ▸). Biphenyl imidazole derivatives exhibit excellent antifungal activity (Zhao et al., 2017 ▸) while benzyloxy triazole derivatives display moderate-to-excellent antibacterial activity (Kaushik et al., 2018 ▸), The organic nitrate-containing benzyloxy isonipecotanilide derivatives exhibit strong NO-mediated vasodilatory effects on pre-contracted rat aorta strips (de Candia et al., 2015 ▸), and studies on bezyloxy oxopyridin benzoate derivatives have revealed that further investigations on these compounds could lead to new compounds that may be considered as anti-malarial or cytotoxic agents (Mohebi et al., 2022 ▸). As part of our studies in this area, our team is working to explore crystal structures of interest for biological studies.
2. Structural commentary
The structure of the title compound is shown in Fig. 1 ▸. The dihedral angle between the aromatic ring of the benzyloxy group (C1–C7) and the (C8–C13) ring in the biphenyl carboxylic acid group is 89.11 (2)°, while the angle between the benzyloxy group (C1–C7) and the (C14–C19) ring in the biphenyl carboxylic acid group is 69.93 (8)°. The dihedral angle between the adjacent rings within the biphenyl carboxylic acid group (C8–C13 and C14–C19) is 26.09 (4)°. The torsion angle within the benzyloxy moiety (C1—C7—O1—C8) is −175.9 (2)°. Otherwise, the bond distances and angles may be regarded as normal. Intramolecular C—H⋯O hydrogen bonds occur.
Figure 1.
Molecular structure of the title compound, showing the atom-labeling scheme. Displacement ellipsoids are drawn at the 50% probability level.
3. Supramolecular features
In the crystal, weak O3—H3A⋯O2 hydrogen bonding leads to the formation of inversion dimers, which are linked by pairs of O—H⋯O hydrogen bonds generating an 
(8) ring motif (Fig. 2 ▸, Table 1 ▸). The O3—H3A distance of 1.20 (5) Å is quite a large as a result of tensile stress between the dimers. The tensile force between the two dimers can increase the donor–hydrogen distance, obviously weakening the hydrogen bond. In addition, the packing is consolidated by four C—H⋯π interactions (Table 1 ▸, Fig. 3 ▸).
Figure 2.
Molecular packing of the title compound, showing the O—H⋯O hydrogen bonds that generate inversion dimers with (8) ring motifs.
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 and Cg2 are the centroids of the C1–C6 and C8–C12 rings, respectively,
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C15—H15⋯O2 | 0.93 | 2.48 | 2.791 (3) | 100 |
| C17—H17⋯O3 | 0.93 | 2.48 | 2.767 (4) | 98 |
| O3—H3A⋯O2i | 1.20 (5) | 1.42 (5) | 2.617 (3) | 175 (4) |
| C3—H3⋯Cg1ii | 0.93 | 2.88 | 3.711 (4) | 149 |
| C6—H6⋯Cg1iii | 0.93 | 2.77 | 3.588 (4) | 147 |
| C9—H9⋯Cg2iv | 0.93 | 2.86 | 3.667 (3) | 146 |
| C12—H12⋯Cg2v | 0.93 | 2.81 | 3.629 (3) | 147 |
Symmetry codes: (i) 
; (ii) 
; (iii) 
; (iv) 
; (v) 
.
Figure 3.
Packing of the molecules showing C—H⋯π interactions.
4. Database survey
A search of the Cambridge Structural Database (CSD version 2.0.4, December 2019; Groom et al., 2016 ▸) for molecules containing [1,1′-biphenyl]-3-carboxylic acid resulted in eleven matches. Of these, five compounds, CUFYEL (Guo et al., 2024 ▸), HUJZIY, HUJZOE and HUJZUK (O’Malley et al., 2020 ▸) and SEBMOF (Barbas et al., 2022 ▸) have dihedral angles between the aromatic rings of the biphenyl carboxylic acid group ranging from 40.99 (2) to 44.58 (3)°. In three compounds, ILURAL (Hurlock et al., 2021 ▸), QAKHOD (O’Malley et al., 2021 ▸ and RADDIN (Doiron et al., 2020 ▸), one of the dihedral angles lies between 54.71 (3) and 59.70 (6)°. In the title compound, this dihedral angle is 26.09 (4)°. The relatively small dihedral angle may be attributed to the presence of the bulky benzyloxy group attached to the biphenyl carboxylic acid group and may also be a result of the tensile force between the two dimers. For molecules containing the benzyloxy fragment, a search resulted in thirty matches: in all of these, the torsion angle of the linking C—O—C—C unit indicates a conformation close to anti.
5. Synthesis and crystallization
Methyl 4′-(benzyloxy)-[1,1′-biphenyl]-3-carboxylate was added in a round-bottom flask containing a solution (5%, 1.25 g of KOH in 25 mL of ethanol) of potassium hydroxide in water and a small excess amount of ethyl alcohol. The whole reaction mixture was refluxed at 373 K for 6 h, cooled and poured into ice-cold hydrochloric acid. The product 4′-(benzyloxy)-[1,1′-biphenyl]-3-carboxylic acid separated out as a solid, which was filtered and then washed with water to remove excess hydrochloric acid. Finally, single crystals suitable for X-ray diffraction studies were grown in pure ethanol at room temperature. For the detailed synthesis procedure, see Radhika et al. (2011 ▸). 1H NMR: (CDCl3, δ): 12 (s, 1H, –COOH), 8.74-8.24 (m, 2H, Ar-H), 7.85–7.78 (m, 4H, Ar-H), 7.48–7.02 (m, 7H, Ar-H), 5.0 (s, 2H, –OCH2–) ppm.
6. Hirshfeld surface analysis
Hirshfeld surface analysis (Hirshfeld, 1977 ▸; Spackman & Jayatilaka, 2009 ▸) was performed to visualize and quantify the intermolecular interactions in the title molecule using CrystalExplorer (Spackman et al., 2021 ▸). The Hirshfeld surface mapped over dnorm is shown in Fig. 4 ▸ with colors representing intermolecular interactions on the surface. The red regions are attributed to the O2—H2⋯O3 interaction. The two-dimensional fingerprint plots indicate that the major contributions to the crystal packing are from H⋯H (39.7%), C⋯H/H⋯C (39%) and O⋯H/H⋯O (18%) as shown in Fig. 5 ▸. The net interaction energies were calculated as Eele = 145.6 kJ mol−1, Epol = 47.3 kJ mol−1, Edis = 201.0 kJ mol−1, Erep = 83.6 kJ mol−1 and total interaction energy Etot = 308.0 kJ mol−1. The topology of the energy frameworks for the Coulombic, dispersion and total energies are shown in Fig. 6 ▸. Higher dispersion energy can affect the reactivity of the molecules, particularly in biological processes such as docking the ligand with a protein. The dispersion energy influences the binding affinity of the ligand by providing an additional attractive force.
Figure 4.
The Hirshfeld surface of the title compound with the dashed lines indicating the O—H⋯O hydrogen bonds that form inversion dimers.
Figure 5.
The two-dimensional fingerprint plots of the title molecule showing all interactions and those delineated into H⋯H, C⋯H/H⋯C and H⋯O/O⋯H.
Figure 6.
The energy frameworks for interaction energies in the title compound, (a) Coulombic energy, (b) dispersion energy, (c) total energy and (d) total energy annotated.
7. DFT Studies
The HOMO–LUMO levels are valuable for understanding the molecule’s interactions in chemical reactions, electronic transitions, and stability. The molecule was constructed using Gaussview 06 and optimized with the B3LYP/6-311++G(d,p) model in Gaussian 09 (Frisch et al., 2009 ▸). The optimized structure is illustrated in Fig. 7 ▸. The optimized bond lengths, angles and torsion angles were compared with those obtained from SCXRD data (Table 2 ▸) and are found to be in good agreement with each other. The tensile force between the two dimers is not taken into the account in the quantum calculations, so there is a common donor–hydrogen distance around the carboxylic group in the DFT calculations. Fig. 8 ▸ shows the HOMO and LUMO and their energy gap in the title compound. In the HOMO, electron density is mainly concentrated on the biphenyl rings, with a smaller presence on the oxygen atom in the benzyloxy group. In the LUMO, the electron density is primarily located on the benzoic acid portion of the biphenyl group. The HOMO and LUMO energies are −6.0814 eV and −1.7466 eV, respectively, resulting in an energy gap (ΔE) of 4.3347 eV. Reactivity descriptors including ionization energy (I), electron affinity (A), electronegativity (χ), chemical hardness (η), chemical potential (μ), electrophilicity index (ω), and chemical softness (S) are presented in Table 3 ▸. The electrophilicity index value of 3.534 eV indicates that the molecule exhibits strong electrophilicity.
Figure 7.
The optimized structure of the title compound generated using Gaussian 09 at the B3LYP/6–311++G(d,p) level.
Table 2. Selected bond lengths, angles and torsion angles (Å, °).
| Parameter | SCXRD | DFT |
|---|---|---|
| O1—C8 | 1.366 (3) | 1.36392 |
| O1—C7 | 1.437 (3) | 1.43631 |
| O2—C20 | 1.241 (3) | 1.20944 |
| O3—C20 | 1.270 (3) | 1.35882 |
| C8—O1—C7 | 117.75 (19) | 118.64625 |
| O1—C8—C13 | 115.7 (2) | 115.79634 |
| O1—C8—C9 | 125.3 (2) | 124.91696 |
| C13—C8—C9 | 119.0 (2) | 119.28680 |
| C7—O1—C8—C13 | 179.0 (2) | 179.2209 |
| C7—O1—C8—C9 | −0.5 (4) | −0.79351 |
| C8—O1—C7—C1 | −175.9 (2) | −178.9820 |
| O1—C8—C13—C12 | −178.5 (2) | −179.9223 |
Figure 8.
The HOMO and LUMO molecular orbitals of the title compound.
Table 3. The energy values (eV) of global reactivity descriptors for the title compound.
| E_HOMO_ | −6.0801 |
| E_LUMO_ | −1.7464 |
| Energy gap (eV) | 4.3337 |
| Ionization Energy (I) | 6.0801 |
| Electron affinity (A) | 1.7464 |
| Electronegativity (χ) | 3.91325 |
| Chemical hardness (η) | 2.16685 |
| Chemical softness (S) | 0.231 eV−1 |
| Chemical potential (μ) | −3.91325 |
| Electrophilicity index (ω) | 3.534 |
8. Molecular electrostatic potential
The molecular electrostatic potential surface (MEPS) helps to visualize the electrostatic environment around a molecule and is illustrated for the title compound in Fig. 9 ▸. The electron-rich part with a partial negative charge is shown by the combination of red and pale-yellow regions on the MEPS over the oxygen atom of the carboxylic acid moiety and is an active site for electrophilic attack, which is essential for biological recognition and hydrogen-bonding interactions. The bright-blue region on the MEPS over the hydrogen atom of the carboxylic acid moiety is an active site for possible nucleophilic attack (Friesner et al., 2006 ▸).
Figure 9.
The molecular electrostatic potential surface of the title compound.
9. Molecular docking studies
The docking of a receptor protein, specifically the Omicron variant (PDB ID:8BEC, SARS-COV2-VARIANT), with the synthesized ligand shows a very good binding affinity of −7.6 kcal mol−1. AutoDock Vina (Morris et al., 2009 ▸) was used for theoretical calculations and the interaction was generated by Discovery Studio Visualizer (Biovia, 2017 ▸). A 2D view of the docking interactions shows one conventional bond with ACP C:61 and two π-donor hydrogen bonds with GLY C:44 and LEU C:45. The higher dispersion energy influences the ligand to have conformational stability with the protein. The idea of docking of the protein molecules with the centroids of the ligands can be used in structure-based drug design. Modifications in the synthesized ligands by varying functional groups and atoms can easily achieve a very good binding affinity with the target protein. In the title ligand we can see three centroids, of which Cg1 and Cg2 (the centroids of the C1–C6 and C8–C12 rings) play significant role in the intermolecular interactions. Meanwhile these act as anchor points for the ligand, the interaction with these centroids and GLU C:139, GLU C:46 and ALU C:60 PRO C:234 amino acids forming π–anion and π–donor hydrogen bonds, respectively. In addition to these interactions, a few van der Waals interactions can be seen around the ligand and unfavorable interactions are observed at the –OH group; these are shown in Fig. 10 ▸.
Figure 10.
The three-dimensional and two-dimensional views of various interactions between the title molecule (ligand) and the receptor protein SARS-Covid-2 (PDB ID:8BEC).
10. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. The hydrogen atom of the hydroxyl group was freely refined. All other H atoms were positioned with idealized geometry and refined using a riding model with C—H = 0.93–0.97 Å and Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
Table 4. Experimental details.
| Crystal data | |
| Chemical formula | C20H16O3 |
| M r | 304.33 |
| Crystal system, space group | Monoclinic, P2/c |
| Temperature (K) | 299 |
| a, b, c (Å) | 31.9237 (13), 7.0199 (3), 6.9184 (3) |
| β (°) | 91.864 (1) |
| V (Å3) | 1549.60 (11) |
| Z | 4 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.31 × 0.27 × 0.18 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII CCD |
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| Tmin, Tmax | 0.972, 0.983 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 35610, 2760, 2207 |
| R int | 0.072 |
| (sin θ/λ)max (Å−1) | 0.597 |
| Refinement | |
| R[F2 > 2σ(F2)], wR(F2), S | 0.069, 0.162, 1.13 |
| No. of reflections | 2760 |
| No. of parameters | 212 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.18, −0.20 |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989025001021/nx2019sup1.cif
Supporting information file. DOI: 10.1107/S2056989025001021/nx2019Isup2.cml
CCDC reference: 2421495
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors extend their gratitude to Kishore and Shashikanth, SSCU, IISc for their help in collecting SCXRD data.
supplementary crystallographic information
3-[4-(Benzyloxy)phenyl]benzoic acid. Crystal data
| C20H16O3 | F(000) = 640 |
| Mr = 304.33 | Dx = 1.304 Mg m−3 |
| Monoclinic, P2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yc | Cell parameters from 2207 reflections |
| a = 31.9237 (13) Å | θ = 2.0–25.0° |
| b = 7.0199 (3) Å | µ = 0.09 mm−1 |
| c = 6.9184 (3) Å | T = 299 K |
| β = 91.864 (1)° | Prism, colourless |
| V = 1549.60 (11) Å3 | 0.31 × 0.27 × 0.18 mm |
| Z = 4 |
3-[4-(Benzyloxy)phenyl]benzoic acid. Data collection
| Bruker SMART APEXII CCD diffractometer | 2760 independent reflections |
| Radiation source: fine-focus sealed tube | 2207 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.072 |
| Detector resolution: 1.09 pixels mm-1 | θmax = 25.1°, θmin = 2.6° |
| φ and Ω scans | h = −38→38 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | k = −8→8 |
| Tmin = 0.972, Tmax = 0.983 | l = −8→8 |
| 35610 measured reflections |
3-[4-(Benzyloxy)phenyl]benzoic acid. Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.069 | Hydrogen site location: mixed |
| wR(F2) = 0.162 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.13 | w = 1/[σ2(Fo2) + (0.0584P)2 + 1.0677P] where P = (Fo2 + 2Fc2)/3 |
| 2760 reflections | (Δ/σ)max < 0.001 |
| 212 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| 0.12 constraints |
3-[4-(Benzyloxy)phenyl]benzoic acid. Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
3-[4-(Benzyloxy)phenyl]benzoic acid. Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.82388 (5) | 0.2450 (3) | 0.2817 (2) | 0.0451 (5) | |
| O2 | 0.55270 (6) | 0.2739 (4) | 0.2404 (3) | 0.0803 (8) | |
| O3 | 0.51314 (6) | 0.2653 (5) | 0.4950 (3) | 0.0951 (10) | |
| C8 | 0.78393 (7) | 0.2524 (3) | 0.3464 (3) | 0.0348 (6) | |
| C12 | 0.73839 (7) | 0.1552 (4) | 0.5975 (3) | 0.0383 (6) | |
| H12 | 0.734753 | 0.091923 | 0.713867 | 0.046* | |
| C13 | 0.77746 (8) | 0.1606 (4) | 0.5216 (4) | 0.0388 (6) | |
| H13 | 0.799867 | 0.102365 | 0.587397 | 0.047* | |
| C14 | 0.66164 (7) | 0.2393 (3) | 0.5886 (3) | 0.0365 (6) | |
| C10 | 0.71123 (8) | 0.3348 (4) | 0.3318 (4) | 0.0388 (6) | |
| H10 | 0.688949 | 0.394984 | 0.266940 | 0.047* | |
| C11 | 0.70391 (7) | 0.2422 (3) | 0.5053 (3) | 0.0348 (6) | |
| C9 | 0.75043 (7) | 0.3408 (4) | 0.2519 (4) | 0.0391 (6) | |
| H9 | 0.754192 | 0.403897 | 0.135543 | 0.047* | |
| C15 | 0.62556 (8) | 0.2555 (4) | 0.4737 (4) | 0.0431 (6) | |
| H15 | 0.628038 | 0.268632 | 0.340789 | 0.052* | |
| C16 | 0.58606 (8) | 0.2530 (4) | 0.5484 (4) | 0.0451 (7) | |
| C1 | 0.87677 (8) | 0.2945 (4) | 0.0553 (4) | 0.0417 (6) | |
| C6 | 0.90842 (9) | 0.4146 (4) | 0.1193 (4) | 0.0522 (7) | |
| H6 | 0.901833 | 0.522717 | 0.189822 | 0.063* | |
| C19 | 0.65636 (9) | 0.2203 (4) | 0.7877 (4) | 0.0468 (7) | |
| H19 | 0.679840 | 0.208984 | 0.870101 | 0.056* | |
| C7 | 0.83194 (8) | 0.3350 (4) | 0.1001 (4) | 0.0487 (7) | |
| H7A | 0.827368 | 0.471270 | 0.108922 | 0.058* | |
| H7B | 0.813364 | 0.284253 | −0.001031 | 0.058* | |
| C17 | 0.58190 (9) | 0.2345 (4) | 0.7471 (4) | 0.0540 (8) | |
| H17 | 0.555481 | 0.233411 | 0.799881 | 0.065* | |
| C20 | 0.54871 (9) | 0.2661 (5) | 0.4180 (4) | 0.0566 (8) | |
| C2 | 0.88725 (9) | 0.1367 (4) | −0.0504 (4) | 0.0528 (7) | |
| H2 | 0.866309 | 0.054912 | −0.096613 | 0.063* | |
| C18 | 0.61711 (9) | 0.2180 (5) | 0.8637 (4) | 0.0566 (8) | |
| H18 | 0.614462 | 0.205111 | 0.996566 | 0.068* | |
| C5 | 0.94942 (9) | 0.3774 (5) | 0.0806 (4) | 0.0626 (9) | |
| H5 | 0.970380 | 0.459793 | 0.125360 | 0.075* | |
| C3 | 0.92875 (10) | 0.0985 (5) | −0.0889 (5) | 0.0626 (9) | |
| H3 | 0.935578 | −0.009465 | −0.159101 | 0.075* | |
| C4 | 0.95967 (9) | 0.2195 (5) | −0.0237 (4) | 0.0617 (9) | |
| H4 | 0.987522 | 0.194607 | −0.050102 | 0.074* | |
| H3A | 0.4838 (16) | 0.265 (7) | 0.382 (7) | 0.155 (19)* |
3-[4-(Benzyloxy)phenyl]benzoic acid. Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0345 (10) | 0.0588 (12) | 0.0423 (10) | 0.0053 (8) | 0.0067 (7) | 0.0124 (9) |
| O2 | 0.0398 (12) | 0.157 (3) | 0.0447 (13) | −0.0007 (13) | 0.0056 (9) | 0.0059 (14) |
| O3 | 0.0307 (11) | 0.199 (3) | 0.0562 (14) | 0.0012 (15) | 0.0094 (10) | −0.0046 (17) |
| C8 | 0.0322 (12) | 0.0346 (13) | 0.0379 (13) | −0.0004 (10) | 0.0043 (10) | −0.0009 (11) |
| C12 | 0.0399 (14) | 0.0415 (14) | 0.0336 (13) | 0.0013 (11) | 0.0038 (10) | 0.0057 (11) |
| C13 | 0.0373 (14) | 0.0416 (14) | 0.0372 (14) | 0.0057 (11) | −0.0036 (11) | 0.0057 (11) |
| C14 | 0.0389 (14) | 0.0332 (13) | 0.0378 (13) | −0.0023 (11) | 0.0049 (11) | −0.0026 (11) |
| C10 | 0.0352 (13) | 0.0431 (15) | 0.0381 (14) | 0.0049 (11) | 0.0009 (10) | 0.0062 (12) |
| C11 | 0.0365 (13) | 0.0327 (13) | 0.0353 (13) | −0.0019 (11) | 0.0025 (10) | −0.0020 (11) |
| C9 | 0.0384 (14) | 0.0410 (14) | 0.0383 (14) | 0.0035 (11) | 0.0045 (11) | 0.0079 (12) |
| C15 | 0.0371 (14) | 0.0558 (17) | 0.0366 (14) | −0.0009 (12) | 0.0059 (11) | −0.0024 (13) |
| C16 | 0.0390 (14) | 0.0552 (17) | 0.0414 (15) | −0.0005 (12) | 0.0077 (11) | −0.0035 (13) |
| C1 | 0.0416 (14) | 0.0467 (15) | 0.0371 (14) | −0.0021 (12) | 0.0068 (11) | 0.0070 (12) |
| C6 | 0.0550 (17) | 0.0605 (18) | 0.0415 (15) | −0.0071 (14) | 0.0090 (13) | −0.0110 (14) |
| C19 | 0.0480 (16) | 0.0544 (17) | 0.0381 (15) | −0.0021 (13) | 0.0032 (12) | −0.0010 (13) |
| C7 | 0.0443 (15) | 0.0581 (17) | 0.0442 (16) | 0.0034 (13) | 0.0101 (12) | 0.0178 (14) |
| C17 | 0.0401 (15) | 0.074 (2) | 0.0490 (17) | −0.0001 (14) | 0.0167 (13) | −0.0016 (15) |
| C20 | 0.0344 (15) | 0.085 (2) | 0.0509 (18) | 0.0000 (15) | 0.0084 (12) | −0.0004 (16) |
| C2 | 0.0525 (17) | 0.0566 (18) | 0.0496 (17) | −0.0112 (14) | 0.0054 (13) | −0.0063 (14) |
| C18 | 0.0515 (18) | 0.081 (2) | 0.0379 (15) | −0.0022 (15) | 0.0094 (13) | −0.0013 (15) |
| C5 | 0.0447 (17) | 0.087 (2) | 0.0561 (19) | −0.0173 (16) | 0.0053 (14) | −0.0050 (18) |
| C3 | 0.066 (2) | 0.062 (2) | 0.060 (2) | 0.0091 (16) | 0.0209 (16) | −0.0060 (16) |
| C4 | 0.0433 (17) | 0.090 (3) | 0.0530 (18) | 0.0062 (17) | 0.0166 (14) | 0.0098 (18) |
3-[4-(Benzyloxy)phenyl]benzoic acid. Geometric parameters (Å, º)
| O1—C8 | 1.366 (3) | C16—C20 | 1.474 (4) |
| O1—C7 | 1.437 (3) | C1—C2 | 1.375 (4) |
| O2—C20 | 1.241 (3) | C1—C6 | 1.378 (4) |
| O3—C20 | 1.270 (3) | C1—C7 | 1.501 (4) |
| O3—H3A | 1.20 (5) | C6—C5 | 1.370 (4) |
| C8—C9 | 1.382 (3) | C6—H6 | 0.9300 |
| C8—C13 | 1.394 (3) | C19—C18 | 1.375 (4) |
| C12—C13 | 1.369 (3) | C19—H19 | 0.9300 |
| C12—C11 | 1.395 (3) | C7—H7A | 0.9700 |
| C12—H12 | 0.9300 | C7—H7B | 0.9700 |
| C13—H13 | 0.9300 | C17—C18 | 1.367 (4) |
| C14—C15 | 1.383 (4) | C17—H17 | 0.9300 |
| C14—C19 | 1.400 (3) | C2—C3 | 1.386 (4) |
| C14—C11 | 1.485 (3) | C2—H2 | 0.9300 |
| C10—C9 | 1.385 (3) | C18—H18 | 0.9300 |
| C10—C11 | 1.391 (3) | C5—C4 | 1.368 (5) |
| C10—H10 | 0.9300 | C5—H5 | 0.9300 |
| C9—H9 | 0.9300 | C3—C4 | 1.368 (4) |
| C15—C16 | 1.378 (3) | C3—H3 | 0.9300 |
| C15—H15 | 0.9300 | C4—H4 | 0.9300 |
| C16—C17 | 1.391 (4) | ||
| C8—O1—C7 | 117.75 (19) | C18—C19—C14 | 121.2 (3) |
| C20—O3—H3A | 115 (2) | C18—C19—H19 | 119.4 |
| O1—C8—C9 | 125.3 (2) | C14—C19—H19 | 119.4 |
| O1—C8—C13 | 115.7 (2) | O1—C7—C1 | 107.2 (2) |
| C9—C8—C13 | 119.0 (2) | O1—C7—H7A | 110.3 |
| C13—C12—C11 | 121.8 (2) | C1—C7—H7A | 110.3 |
| C13—C12—H12 | 119.1 | O1—C7—H7B | 110.3 |
| C11—C12—H12 | 119.1 | C1—C7—H7B | 110.3 |
| C12—C13—C8 | 120.6 (2) | H7A—C7—H7B | 108.5 |
| C12—C13—H13 | 119.7 | C18—C17—C16 | 119.2 (2) |
| C8—C13—H13 | 119.7 | C18—C17—H17 | 120.4 |
| C15—C14—C19 | 116.7 (2) | C16—C17—H17 | 120.4 |
| C15—C14—C11 | 121.8 (2) | O2—C20—O3 | 122.5 (3) |
| C19—C14—C11 | 121.6 (2) | O2—C20—O3 | 122.5 (3) |
| C9—C10—C11 | 122.5 (2) | O2—C20—O3 | 122.5 (3) |
| C9—C10—H10 | 118.7 | O2—C20—O3 | 122.5 (3) |
| C11—C10—H10 | 118.7 | O2—C20—C16 | 120.1 (2) |
| C10—C11—C12 | 116.6 (2) | O2—C20—C16 | 120.1 (2) |
| C10—C11—C14 | 121.4 (2) | O3—C20—C16 | 117.4 (3) |
| C12—C11—C14 | 122.0 (2) | O3—C20—C16 | 117.4 (3) |
| C8—C9—C10 | 119.5 (2) | C1—C2—C3 | 120.6 (3) |
| C8—C9—H9 | 120.2 | C1—C2—H2 | 119.7 |
| C10—C9—H9 | 120.2 | C3—C2—H2 | 119.7 |
| C16—C15—C14 | 122.6 (2) | C17—C18—C19 | 121.0 (3) |
| C16—C15—H15 | 118.7 | C17—C18—H18 | 119.5 |
| C14—C15—H15 | 118.7 | C19—C18—H18 | 119.5 |
| C15—C16—C17 | 119.3 (3) | C4—C5—C6 | 120.3 (3) |
| C15—C16—C20 | 120.1 (2) | C4—C5—H5 | 119.9 |
| C17—C16—C20 | 120.6 (2) | C6—C5—H5 | 119.9 |
| C2—C1—C6 | 118.4 (3) | C4—C3—C2 | 120.0 (3) |
| C2—C1—C7 | 120.8 (3) | C4—C3—H3 | 120.0 |
| C6—C1—C7 | 120.8 (3) | C2—C3—H3 | 120.0 |
| C5—C6—C1 | 121.1 (3) | C3—C4—C5 | 119.6 (3) |
| C5—C6—H6 | 119.5 | C3—C4—H4 | 120.2 |
| C1—C6—H6 | 119.5 | C5—C4—H4 | 120.2 |
| C7—O1—C8—C9 | −0.5 (4) | C8—O1—C7—C1 | −175.9 (2) |
| C7—O1—C8—C13 | 179.0 (2) | C2—C1—C7—O1 | 90.9 (3) |
| C11—C12—C13—C8 | −0.7 (4) | C6—C1—C7—O1 | −89.1 (3) |
| O1—C8—C13—C12 | −178.5 (2) | C15—C16—C17—C18 | −0.4 (5) |
| C9—C8—C13—C12 | 1.0 (4) | C20—C16—C17—C18 | 178.4 (3) |
| C9—C10—C11—C12 | 0.4 (4) | C15—C16—C20—O2 | 2.1 (5) |
| C9—C10—C11—C14 | 179.5 (2) | C17—C16—C20—O2 | −176.8 (3) |
| C13—C12—C11—C14 | −179.1 (2) | C15—C16—C20—O2 | 2.1 (5) |
| C15—C14—C11—C10 | 26.6 (4) | C17—C16—C20—O2 | −176.8 (3) |
| C19—C14—C11—C10 | −153.3 (3) | C15—C16—C20—O3 | −179.2 (3) |
| C15—C14—C11—C12 | −154.4 (3) | C17—C16—C20—O3 | 1.9 (5) |
| C19—C14—C11—C12 | 25.7 (4) | C15—C16—C20—O3 | −179.2 (3) |
| O1—C8—C9—C10 | 178.8 (2) | C17—C16—C20—O3 | 1.9 (5) |
| C13—C8—C9—C10 | −0.6 (4) | C6—C1—C2—C3 | 1.0 (4) |
| C11—C10—C9—C8 | −0.1 (4) | C7—C1—C2—C3 | −179.1 (3) |
| C19—C14—C15—C16 | −0.1 (4) | C16—C17—C18—C19 | 0.3 (5) |
| C11—C14—C15—C16 | 180.0 (2) | C14—C19—C18—C17 | −0.1 (5) |
| C14—C15—C16—C17 | 0.4 (4) | C1—C6—C5—C4 | 0.3 (5) |
| C14—C15—C16—C20 | −178.5 (3) | C1—C2—C3—C4 | −0.9 (5) |
| C2—C1—C6—C5 | −0.7 (4) | C2—C3—C4—C5 | 0.4 (5) |
| C7—C1—C6—C5 | 179.3 (3) | C6—C5—C4—C3 | −0.1 (5) |
| C11—C14—C19—C18 | 179.9 (3) |
3-[4-(Benzyloxy)phenyl]benzoic acid. Hydrogen-bond geometry (Å, º)
Cg1 and Cg2 are the centroids of the C1–C6 and C8–C12 rings, respectively,
| D—H···A | D—H | H···A | D···A | D—H···A |
| C15—H15···O2 | 0.93 | 2.48 | 2.791 (3) | 100 |
| C17—H17···O3 | 0.93 | 2.48 | 2.767 (4) | 98 |
| O3—H3A···O2i | 1.20 (5) | 1.42 (5) | 2.617 (3) | 175 (4) |
| C3—H3···Cg1ii | 0.93 | 2.88 | 3.711 (4) | 149 |
| C6—H6···Cg1iii | 0.93 | 2.77 | 3.588 (4) | 147 |
| C9—H9···Cg2iv | 0.93 | 2.86 | 3.667 (3) | 146 |
| C12—H12···Cg2v | 0.93 | 2.81 | 3.629 (3) | 147 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) x, −y, z−1/2; (iii) x, −y+1, z−3/2; (iv) x, −y+1, z−1/2; (v) x, −y, z−3/2.
Funding Statement
Funding for this research was provided by: Vission Group of Science and Technology (award No. GRD319 to B. S. Palakshamurthy).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989025001021/nx2019sup1.cif
Supporting information file. DOI: 10.1107/S2056989025001021/nx2019Isup2.cml
CCDC reference: 2421495
Additional supporting information: crystallographic information; 3D view; checkCIF report