Table 1.

Performance on ABAG-AF3 dataset using DockQ-wave as reference metric. AFM-AF2Rank refers to AF-Multimer-based AF2Rank. For the same target, there may be multiple top 1 models, and we select the average of the losses of these models as the ranking loss of the target.

Method	Ranking loss	Top10 mean
TopoQA	0.092	0.592
AF3	0.054	0.614
DproQA	0.124	0.585
ComplexQA	0.106	0.590
AFM-AF2Rank	0.094	0.589
TRScore	0.114	0.587
GNN-DOVE	0.107	0.590