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. 2024 Dec 25;41(4):367–374. doi: 10.5511/plantbiotechnology.24.0522a

Table 4. Repetitive sequences in the Micro-Tom chromosome-level genome assembly (SLM_r2.0.pmol).

Repeat type No. of elements Length occupied (bp) Percentage of repetitive sequences (relative to length of the entire genome)
SINEs 6,313 789,544 0.09
LINEs 34,374 14,573,305 1.75
LTR elements 210,540 303,544,452 36.43
DNA transposons 98,905 30,015,504 3.6
Small RNA 9,167 13,323,116 1.6
Satellites 2,244 808,584 0.1
Simple repeats 105,416 7,238,810 0.87
Low complexity repeats 21,347 1,078,936 0.13
Unclassified 545,763 238,127,988 28.58