Table 4. Repetitive sequences in the Micro-Tom chromosome-level genome assembly (SLM_r2.0.pmol).
Repeat type | No. of elements | Length occupied (bp) | Percentage of repetitive sequences (relative to length of the entire genome) |
---|---|---|---|
SINEs | 6,313 | 789,544 | 0.09 |
LINEs | 34,374 | 14,573,305 | 1.75 |
LTR elements | 210,540 | 303,544,452 | 36.43 |
DNA transposons | 98,905 | 30,015,504 | 3.6 |
Small RNA | 9,167 | 13,323,116 | 1.6 |
Satellites | 2,244 | 808,584 | 0.1 |
Simple repeats | 105,416 | 7,238,810 | 0.87 |
Low complexity repeats | 21,347 | 1,078,936 | 0.13 |
Unclassified | 545,763 | 238,127,988 | 28.58 |