Table 5. Genes with deleterious mutations in large-fruit Micro-Tom mutants.

Gene ID	Mutation	Mutant line	Gene annotation
SLM2ch01g03908	Missense	TOMJPE5906	MADS-box transcription factor
SLM2ch02g07037	Nonsense	TOMJPE5409	Mate efflux family protein
SLM2ch03g10021	Splice donor variant	TOMJPE5212-5	Amino-acid N-acetyltransferase
SLM2ch03g13085	Nonsense	TOMJPE5770-1	NMDA receptor-regulated protein 1
SLM2ch04g13789	Splice donor variant	TOMJPE3484	PHD domain-containing protein
SLM2ch06g23428	Nonsense	TOMJPE5906	Transcriptional regulator of RNA polII, SAGA, subunit
SLM2ch07g27934	Nonsense	TOMJPE5770-1	Belongs to the short-chain dehydrogenases reductases family
SLM2ch08g31097	Missense	TOMJPE5906	Histidine decarboxylase
SLM2ch09g32719	Nonsense	TOMJPE5212-5	Splicing factor 3A subunit
SLM2ch09g35243	Splice acceptor variant	TOMJPW0604	Serine threonine-protein phosphatase
SLM2ch10g36090	Splice acceptor variant	TOMJPE5906	Purple acid phosphatase
SLM2ch12g42744	Frameshift	TOMJPW0604	Uncharacterized protein
SLM2ch12g42984	Nonsense	TOMJPE5212-5	Histone H2B
SLM2ch12g44447	Splice acceptor variant	TOMJPW0604	Uncharacterized protein