Table 2.

Using long-reads to validate potential repeat-mediated recombinations in mitogenome based on BLASTn.

No.	Path	Reads ID	Identity (%)	Alignment (bp)	Reference start	Reference end	Reads start	Reads end
1	ctg1-R1-ctg2	562c7825-9e7e-4ee8-b743-629e0c5429e0	94.231	11,977	1	11,782	20,947	9,194
2	ctg1-R1-ctg2	1151f81d-0d93-4347-906d-d2a948e02643	97.768	11,603	252	11,784	26,709	15,213
3	ctg3-R1-ctg3	2286ff3b-1bcf-484e-8d90-a9f0fc049c2c	96.615	11,907	1	11,784	25,444	13,695
4	ctg3-R1-ctg3	3cc576dd-d502-4e1b-993e-5d1a8a2b664a	91.94	10,633	1,351	11,784	15,543	5,203
5	ctg3-R1-ctg3	b730da28-53be-40f1-8696-93ad05af9df7	92.45	9,695	761	10,352	1	9,210
6	ctg2-R2-ctg1	6c784803-80c8-418f-9875-8a61fa70a442	95.546	7,589	1	7,519	1,280	8,722
7	ctg2-R2-ctg1	2b3fb0ce-2925-43d1-b629-bdc159c94af4	94.706	5,837	1,089	6,858	1	5,718
8	ctg4-R2-ctg4	b23bc2dc-f634-42a7-a5a4-4fce6ea8ea2b	88.29	7,737	1	7,518	17,324	9,867
9	ctg4-R2-ctg4	45ed6141-ce33-459f-b9c0-7abb14d59bb9	84.447	7,722	26	7,519	21,420	14,093
10	ctg4-R2-ctg4	2652d0ea-c9ef-40fc-8afb-00c9138a3b8f	92.389	7,660	1	7,519	8,225	772
11	ctg4-R2-ctg4	c620907e-5bd2-4d9d-b0e7-1e0c9caaa892	92.478	7,658	1	7,519	8,512	1,055
12	ctg4-R2-ctg4	0edb2542-3667-427c-a802-8bc9fe1fc5e3	97.11	7,578	1	7,519	8,470	15,959
13	ctg4-R2-ctg4	562afc1c-6b1f-47d5-a0a8-d376cd34e362	96.808	7,363	213	7,519	18,473	25,742
14	ctg2-R2-ctg4	c4604840-5506-41df-921a-1625836b610a	97.676	7,572	1	7,519	10,027	2,525
15	ctg2-R2-ctg4	81dc97e4-9b4f-42f5-a6bc-3ed9c41cce8a	96.139	7,433	1	7,375	7,336	6
16	ctg2-R2-ctg4	804e0dd3-25c6-40ff-b219-53ea20270aa7	88.613	6,077	1,235	7,159	5,887	1
17	ctg4-R2-ctg1	5da75316-8aa7-455b-8a7e-0b24b33339f6	89.496	7,711	1	7,519	56,423	49,073