TABLE 1.
Sense sequence of the oligonucleotides used for EMSAa
Name | Location | Sequence or probe for EMSA |
---|---|---|
N1* | −96 | 5′-TGGACTGTTTCCGTTTCTG-3′ |
N2* | −199 | 5′-GTCCTTTTTTCCCCTTGCA-3′ |
N3* | −236 | 5′-TCTTCATTTTCCTGGGCTC-3′ |
N4* | −268 | 5′-AGGCCTGGGAAATTCTGAG-3′ |
N5* | −394 | 5′-ATTAAAGGGAAAATTTCAT-3′ |
N6* | −554 | 5′-TTGGACTTTTCCAAACTCT-3′ |
N7* | −584 | 5′-TTAGACTTTTCCAGCTGAA-3′ |
N8* | −680 | 5′-CAATGGCTTTCCAGGGGAA-3′ |
N9 | −820 | 5′-TTCCTTCTTTCCATTGTCT-3′ |
N10 | −896 | 5′-TCTCTGCTTTCCATTTTTT-3′ |
N11 | −926 | 5′-GAACTAATTTCCTATTTTC-3′ |
N12* | −1449 | 5′-ATTGGGTTTTCCCTCCTTA-3′ |
N13* | −1720 | 5′-CAGTCTCTTTCCTTTGAAA-3′ |
N14* | −1794 | 5′-CCTTTCCTTTCCCCTTAAG-3′ |
N15* | −1799 | 5′-TGCTCCCTTTCCTTTCCCC-3′ |
N16* | −1866 | 5′-TGGTGCCTTTCCTCTCTGC-3′ |
N17* | −2076 | 5′-AAGAGTCTTTCCCTCTTGT-3′ |
G1* | −185 | 5′-TTGCATTTTATCAACAGCCC-3′ |
G2* | −299 | 5′-ATTTTGTAGATAAATTGTCA-3′ |
G3* | −317 | 5′-CATAGTATTATCACTTAGAT-3′ |
G4* | −377 | 5′-TTTTAAATGATAATGCCACT-3′ |
G5* | −747 | 5′-AGCACCTTTATCCATTGAAC-3′ |
G6* | −940 | 5′-TGTACAAAGATAAGGAACTA-3′ |
G7 | −1208 | 5′-CACAATTCTATCTTTTTGGA-3′ |
G8* | −1260 | 5′-CCTTAGTAGATATGTTGGCC-3′ |
G9* | −1325 | 5′-AGTAATAAGATACAGAGGGC-3′ |
G10 | −1652 | 5′-TGTTCATGTATCGGACCCAG-3′ |
G11 | −1754 | 5′-ATGAGAGCTATCTTCACCCA-3′ |
G12 | −1766 | 5′-ATCTCTGTGATAATGAGAGC-3′ |
G13 | −1775 | 5′-AGTCAGAATATCTCTGTGAT-3′ |
G14 | −2044 | 5′-GTGTTAACTATCCCTCCCCT-3′ |
G15 | −2091 | 5′-AGTCAACATATCTTTAAGAG-3′ |
IL4* | 5′-TACATTGGAAAATTTTATTAC-3′ |
*, used in EMSA. The core consensus DNA binding element is highlighted in boldface text. Oligonucleotides with names beginning with N represent putative NFAT sites, while oligonucleotides beginning with G represent putative GATA binding sites.