Table 2. Description of isolates and their identification.

Animal	Sample	Tissue	RD9 PCR	RD4 PCR	WGS*	Spoligotype	MTBC lineage
s858	SH019	Liver	RD9−	RD4−	M. bovis	SB1176	Af2
s858	SH015	Liver	RD9−	RD4−	M. bovis	SB1176	Af2
s858	SH016	Liver	RD9−	RD4−	M. bovis	SB1176	Af2
s858	SH017	Liver	RD9−	NP	M. peregrinum	na	na
s968	SH20	Liver	RD9−	RD4−	M. peregrinum	na	na
s968	SH21	Liver	RD9−	RD4−	Streptomyces	na	na
b908	SH023	Lung	RD9−	RD4−	M. bovis	SB1176	Af2
b908	SH025	Lung	RD9−	RD4−	M. bovis	SB1176	Af2
a389	SH024	Lung	RD9+	RD4+	M. tuberculosis	L4	L4
a389	SH013	Lung	RD9+	RD4+	M. tuberculosis	L4	L4
s103	SH026	Lung	RD9−	RD4−	M. bovis	SB1176	Af2
h124	SH005	Lung	NP†	NP	M. nonchromogenicus	na	na
s802	SH010	Liver	NP	NP	M. nonchromogenicus	na	na
a598	SH014	Liver	NP	NP	M. peregrinum	na	na
h448	SH018	Lung	RD9−	RD4−	M. bovis	Unknown	Af2
s219	A004_181	Lung	NP	nd	N. farcinica	na	na
s219	A004B_182	Lung	nd	nd	N. farcinica	na	na
s219	S219_183	Lung	nd	nd	N. farcinica	na	na

NP,No Product; nd,Not Done; na,Not Applicable. NP†, faint RD9+band present.

*WGS for all samples is available via NCBI BioProject PRJNA1121228 except samples SH20, SH21, A004_181, and A004B_182.