Abstract
Background
The aim of this study was to investigate the regulation of Salvianolic acid A (SAA) on the chondrogenic differentiation of bone mesenchymal stem cells (BMSCs), and its effect on cartilage repair in knee osteoarthritis (KOA) model rats and the action mechanism.
Methods
Immunohistochemistry was performed to detect collagen type II (COL2A1), MMP13 and caspase-3 (CASP3) expression in cartilage tissues, and Safranin-O/Fast Green staining for cartilage damage. Alcian blue staining was performed to measure chondrogenic differentiation of BMSCs. Chondrocyte apoptosis was detected by using flow cytometry.
Results
SAA treatment significantly attenuated cartilage damage in KOA model rats in a dose-dependent manner, and inhibited chondrocyte apoptosis induced by IL-1β in a dose-dependent manner. Moreover, SAA treatment promoted chondrogenesis-related proteins (COL2A1 and Aggrecan) expression and inhibited catabolism-related proteins (MMP13 and MMP3) expression both in the cartilage tissues from KOA model rat and in the IL-1β-treated chondrocytes. WD repeat domain 5 (WDR5) was a downstream target of SAA, and it facilitated chondrogenic differentiation of BMSCs derived from KOA model rats (KOA-BMSCs). Importantly, the inhibition of SAA treatment to the apoptosis and catabolism of chondrocyte and the promotion of SAA treatment to chondrogenic differentiation of KOA-BMSCs were rescued by silencing WDR5.
Conclusion
Overall, SAA treatment could facilitate cartilage repair via inhibiting the apoptosis and catabolism of chondrocyte and promoting chondrogenic differentiation of KOA-BMSCs by promoting WDR5 expression. Our data suggested that SAA may a potential drug for the treatment of KOA.
Keywords: Knee osteoarthritis, Chondrogenic differentiation, Salvianolic acid A, WD repeat domain 5
Highlights
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Salvianolic acid A attenuates cartilage damage in KOA rat.
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Salvianolic acid A inhibits IL-1β-induced chondrocyte apoptosis and catabolism.
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WDR5 is a downstream target of Salvianolic acid A.
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WDR5 promotes chondrogenic differentiation of KOA-BMSCs.
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Salvianolic acid A performs its function via promoting WDR5 expression.
1. Introduction
Knee osteoarthritis (KOA) is a chronic degenerative joint disorder characterized by progressive cartilage degeneration, bone loss, subchondral bone sclerosis and cartilage calcification or mineralisation, and is the most common cause of pain and disability in elderly patients [1,2]. An epidemiological study showed that more than 300 million people in the world were afflicted by osteoarthritis, and KOA accounts for 75 % of the patients with osteoarthritis [3]. There is currently no effective cure for KOA, although nonpharmacologic (for example, exercise and biomechanical intervention, education, weight management, and walking canes) and pharmacologic (for example, paracetamol, non-steroidal anti-inflammatory drugs and glucosamine) therapy methods are generally effective at relieving pain and improving physical function, but they cannot solve the pathologic process fundamentally [[4], [5], [6]]. Chondrocytes play a key role in maintaining the normal function of articular cartilage. Emerging evidence suggests that reducing the apoptosis of chondrocytes to limit the deterioration of chondrocytes is an effective way to treat KOA. In recent years, the chondrogenic differentiation of bone mesenchymal stem cells (BMSCs) has been proven to be a promising treatment for KOA [7]. Inducing the differentiation of BMSCs to chondrocytes is a significant issue that needs to be resolved at present.
Danzikangxi granules is a traditional Chinese medicine, and it is mainly composed of Danshen Root, Rehmannia glutinosa, Dragon's Blood, Achyranthes bidentata Blume, Malaytea Scurfpea Fruit, Doubleteeth Pubescent Angelica, Bajitian, Ramulus Taxilli, Ground Beetle, Root of Frankincense and White Peony. Danzikangxi granules has been reported to be effective in reducing apoptosis of chondrocytes in KOA animal model, and in improving KOA, while the mechanism of action of it is unknown [8,9]. We have analyzed the active ingredients of Danzikangxi granules through BATMAN database. Among the active ingredients, salvianolic acid A (SAA) has been reported to reduce IL-1β-induced apoptosis in chondrocytes in vitro and in KOA model mouse via regulating NF-κB and MAPK signaling pathway [10], indicating that SAA may has great potential for the development of novel drugs to treat KOA.
WD repeat domain 5 (WDR5) is an important component of SET1/MLL histone-methyltransferase complex. WDR5 is widely involved in various biological activities and plays a crucial role in the development of many disorders, mainly cancers [11]. While the function and action mechanism of WDR5 in the occurrence and development of KOA not yet been reported. Francesca Gori and Marie B Demay have found that the expression of WDR5 (also known as BIG-3) was increasing during the chondrogenic differentiation of chondroprogenitor cell line ATDC5 [12], suggesting that WDR5 may participate in chondrogenic differentiation. In the present study, we found that WDR5 is a potential downstream target of SAA using ChEMBL database.
Firstly, we verified the therapeutic function of SAA at different doses in KOA and the inhibition of SAA at different doses to IL-1β-induced catabolism and apoptosis in chondrocytes. Secondly, we investigated whether WDR5 is a downstream target of SAA and mediates the regulation of SAA to catabolism and apoptosis of chondrocytes. Finally, we clarified whether WDR5 promotes the chondrogenic differentiation of the BMSCs derived from KOA model rats, and ensued whether SAA facilitates BMSCs differentiation into chondrocytes by facilitating WDR5 expression. Our experiments would beneficial develop novel idea for the treatment of KOA, and our findings provide a solid evidence base for a novel therapeutic target.
2. Methods and materials
2.1. Animal experiments
Healthy male SD rats (2-month-old; weighing at 180–220 g) were purchased from Beijing HFK Bioscience Co.Ltd. (Beijing, China). After adaptive feeding for 1 week in a room with 12 h light/dark cycle, the rats were divided randomly into five groups (n = 6 for each group): Sham group (administration with the same amount of normal saline via oral gavage), KOA group (single intra-articular injection of 2.0 mg monosodium iodoacetate into the bilateral knee joint of rats, and monosodium iodoacetate dissolved in 40 μl 0.9 % normal saline), KOA + DMSO group (administration with the same amount of DMSO via oral gavage and the same amount of monosodium iodoacetate), KOA + SAA-10 (administration with 10 mg/kg/d SAA for 1 month via oral gavage and the same amount of monosodium iodoacetate) and KOA + SAA-20 (administration with 20 mg/kg/d SAA for 1 month via oral gavage and the same amount of monosodium iodoacetate). Monosodium iodoacetate was purchased from Sigma, St. Louis (MO, USA). SSA was purchased from Winherb (Shanghai, China).
Animal experiments were conducted in accordance with the internationally accepted ethical guidelines. Ethical approval was obtained from the ethics committee of Hunan University of Chinese Medicine (APPROVAL NUMBER LLBH-202311070015). We have performed animal experiments depends on the Guide for the Care and Use of Laboratory Animals, published by the United States National Institutes of Health (2011).
2.2. Safranin-O/Fast Green staining
One month after SAA treatment, all rats were anesthetized with 40 mg/kg sodium pentobarbital via intraperitoneal injection. Then, fresh knee samples were dissociated from rats, and were stored in 4 % paraformaldehyde. The knee tissues were embedded in paraffin, and then were cut into thin slices with 5-μm-thick. Safranin-O/Fast Green staining Kit (Solarbio, Beijing, China) was obtained for Safranin-O/Fast Green staining according to the manufacture's instruction. Finally, the Osteoarthritis Research Society International (OARSI) score was evaluated to analyze severity of cartilage degeneration.
2.3. Immunohistochemistry
Immunohistochemistry was carried out to analyze the expression level of Collagen type II (COL2A1), Matrix metalloproteinases 13 (MMP13) and Caspase-3 (CASP3) in the knee cartilage samples. The paraffin slices were dewaxed and rehydrated, and were treated with antigen retrieval using EDTA solution (pH 9.0; Servicebio, Wuhan, China). After that, the slices were incubated with 3 % hydrogen peroxide solution for removing endogenous peroxidase for 25 min at room temperature, and subsequently were blocked with 3 % BSA for 30 min at room temperature. The slices next were maintained with the primary antibodies against COL2A1 (1:100; Abcam, UK), MMP13 (1:100; Abcam) and CASP3 (1:100; Abcam) at 4 °C overnight, and next day, the slices were incubated with the HRP-marked secondary antibodies (Abcam) for 1 h at room temperature. Finally, diaminobenzidine-peroxidase substrate and hematoxylin solution (Solarbio) were maintained with the slices to observe the complexes of antibody-antigen. Three fields were randomly selected from each slice for counting the proportion of positive cells.
2.4. Isolation of primary chondrocytes and cell culture
The knee cartilage samples of SD rats (male, five-days-old) were separated under a sterile environment. After removing the cartilage membrane and fascia and washing the cartilage tissues utilizing sterile PBS, cartilage tissues were cut into pieces, which was digested with 1.5 mg/ml Pronase K (Sigma–Aldrich) for 60 min at 37 °C followed by 1.2 mg/ml collagenase II (Sigma–Aldrich) for 60 min at 37 °C. After that, the primary chondrocytes were resuspended and inoculated into 25-cm2 culture flasks. Primary chondrocytes were cultured in DMEM medium (Gibco, Paisley, UK) supplemented with 10 % fetal bovine serum (Clark Bioscience, Claymont, DE, USA) and antibiotics. The culture flasks were placed in an incubator with 5 % CO2 and the cells were cultured at 37 °C. Primary chondrocytes were used for subsequent experiments from passages 1 to 2.
Primary chondrocytes were treated with 0, 5, 10, 15, 20, 25, and 30 μM SAA for 24 h, or treated with 20 μM SAA for 0, 12, 24, 48, and 96 h. 10 ng/ml IL-1β was used to induce cell injury in primary chondrocytes. In addition, the specific siRNA of WDR5 (si-WDR5), negative control siRNA (si-NC), the plasmid expressing WDR5 and the empty plasmid were obtained from GenePharma (Shanghai, China), and were transfected into primary chondrocytes using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA).
2.5. CCK-8 assay
Primary chondrocytes were treated with 0, 5, 10, 15, 20, 25, and 30 μM SAA for 24 h, or treated with 20 μM SAA for 0, 12, 24, 48, and 96 h, then, cell viability of the primary chondrocytes was determined using CCK-8 assay kit (Solarbio). Briefly, primary chondrocytes were seeded into 96-well plate at a density of 5000 cells/well. After SAA treatment, 10 μl CCK-8 solution was added into each well and the plates were incubated for 3 h at 37 °C. The OD value of each well was measured using a microplate reader (Thermo Fisher Scientific) at a wavelength of 450 nm.
2.6. Isolation of BMSCs and cell culture
BMSCs were separated from the femurs of healthy SD rats or KOA rats according to the previous literature [13]. The BMSCs at passage 2 were cultured in the OriCell MSC growth medium (RAWMX-90011, Cyagen Biosciences Inc., USA) containing 10 % fetal bovine serum and 1 % penicillin-streptomycin. To evaluate the chondrogenic differentiation ability of the healthy rats-derived BMSCs (Health-BMSCs) and the KOA rats-derived BMSCs (KOA-BMSCs), the chondrogenic differentiation medium was utilized to change the growth medium. After incubation for 14 days, the cells were fixed and stained with Alcian blue.
2.7. Alcian blue staining
Health-BMSCs and KOA-BMSCs were inoculated into 6-well plates at a density of 1 × 105 cells/well, and after incubation with chondrogenic differentiation medium for 14 days or transfection of plasmid expressing WDR5, the BMSCs were fixed with 4 % paraformaldehyde and washed once with PBS. Subsequently, the chondrocytes derived from BMSCs were stained with 1 % Alcian blue (Sigma–Aldrich) for 30 min at room temperature, and then were washed once with 0.1 % HCl solution. Finally, the cells were visualized using a light microscope (Nikon Corporation).
2.8. RT-qPCR
Total RNA was extracted from chondrocytes and knee cartilage samples by Trizol reagent (Thermo Fisher Scientific, Waltham, USA), and then were reverse-transcribed to synthesize cDNA using a reverse transcription kit (Promega, Wisconsin, USA) according to the manufacturer's instruction. Subsequently, qRT-PCR was performed utilizing the SYBR Green Real-time PCR Master Mix (Toyobo, Osaka, Japan) as the manufacturer's protocol. The gene expression levels were analyzed utilizing the 2−ΔΔCt method. GAPDH was considered as the internal control.
The primers sequences for COL2A1, Aggrecan, MMP13, MMP3, CASP3, WDR5, SRY-related high-mobility group box 9 (SOX9) and GAPDH as follows: COL2A1: 5′-GCCAGGATGCCCGAAAATTAG-3′ (F) and 5′-GTCACCTCTGGGTCCTTGTTC-3′ (R); Aggrecan: 5′-CTAGCTGCTTAGCAGGGATAACG-3′ (F) and 5′-GATGACCCG CAGAGTCACAAAG-3′ (R); MMP13: 5′-AGCAGGTTGAGCCTGAACTGT-3′ (F) and 5′-GCAGCACTGAGCCTTTTCACC-3′ (R); MMP3: 5′-ACTCCCTGGGACTCT ACCAC-3′ (F) and 5′-GGTACCACGAGGACATCAGG-3′ (R); CASP3: 5′-GTATGCT TACTCTACCGCACCC-3′ (F) and 5′-CAGGGAGAAGGACTCAAATTC C-3′ (R); SOX9: 5′-AGCACAAGAAAGACCACCCC-3′ (F) and 5′-CGCCTTGAAGATGGCG TTAG-3′ (R); GAPDH: 5′-GGCAAGTTCAACGGCACAG-3′ (F) and 5′-CGCCAGT AGACTCCACGACA-3′ (R).
2.9. Western blot
Primary chondrocytes, knee cartilage samples and KOA-BMSCs were lysed with RIPA buffer (Solarbio) on the ice for 15 min, which containing 1 % phosphatase and protease inhibitors. After that, lysate mixtures were further lysed utilizing an ultrasonic disruptor, and the BCA protein assay kit (Solarbio) was utilized to examine the protein concentration. Subsequently, protein samples (15 μg per well) were separated on a SDS-PAGE gels, and then were transferred into PVDF membranes (Millipore, USA). Afterwards, the membranes were blocked with 5 % skim milk at room temperature for 1 h, followed by incubation with corresponding primary antibodies against COL2A1 (1:2000; Abcam), MMP13 (1:2000; Abcam), CASP3 (1:2000; Abcam), Bax (1:2000; Abcam), Bcl-2 (1:2000; Abcam), and WDR5 (1:2000; Abcam) at 4 °C overnight. The membranes were maintained with secondary antibodies for 1 h at room temperature. At last, an enhanced chemiluminescence reagent kit (Solarbio) were used to visualize the protein bands.
2.10. Flow cytometry
Primary chondrocytes were digested with 0.25 % trypsin (Thermo Fisher Scientific) and inoculated into 6-well cell culture plates at a density of 2 × 106 cells/well. After SAA treatment or cell transfection for 48 h, the apoptosis of primary chondrocytes was determined through flow cytometry using the Annexin V FITC apoptosis detection kit (BD Biosciences) according to the manufacturer's instructions. Briefly, cells were incubated with 5 μl Annexin V-FITC and 10 μl propidium iodide (PI) in each well for 15 min at room temperature in the dark. After that, cell fluorescence was detected using a flow cytometer with FlowJoSoftware 10 (FlowJo LLC).
2.11. ChEMBL database
ChEMBL (https://www.ebi.ac.uk/chembl/) is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs. We predicted the potential targets of SAA using ChEMBL (version 27) database. The list of these targets was shown in Table 1.
Table 1.
The targets of SAA predicted using ChEMBL (version 27) database.
| Target | Target Pref. Name | Confidence 70 % | Confidence 80 % | Confidence 90 % | Activity Threshold |
|---|---|---|---|---|---|
| CHEMBL2902 | Dihydrofolate reductase | Inactive | Inactive | Inactive | 6 |
| CHEMBL2725 | Beta-lactamase | Active | Active | Both | 6 |
| CHEMBL5062 | Coagulation factor X | Empty | Empty | Active | 6.5 |
| CHEMBL1947 | Thyroid hormone receptor beta-1 | Empty | Empty | Inactive | 7 |
| CHEMBL2157850 | Ubiquitin carboxyl-terminal hydrolase 7 | Inactive | Inactive | Inactive | 6 |
| CHEMBL226 | Adenosine A1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL4618 | Leukotriene A4 hydrolase | Inactive | Inactive | Inactive | 6 |
| CHEMBL1075145 | Transitional endoplasmic reticulum ATPase | Empty | Inactive | Both | 6 |
| CHEMBL1827 | Phosphodiesterase 5A | Empty | Inactive | Inactive | 6 |
| CHEMBL4793 | Dipeptidyl peptidase IX | Empty | Empty | Inactive | 6 |
| CHEMBL3229 | Anandamide amidohydrolase | Inactive | Inactive | Inactive | 6 |
| CHEMBL5880 | Interleukin-2 | Active | Active | Active | 6 |
| CHEMBL4552 | Peripheral-type benzodiazepine receptor | Empty | Inactive | Inactive | 6 |
| CHEMBL2888 | Metabotropic glutamate receptor 3 | Empty | Inactive | Both | 7 |
| CHEMBL1907596 | Neuronal acetylcholine receptor; alpha4/beta2 | Inactive | Inactive | Inactive | 5 |
| CHEMBL2334 | Caspase-3 | Inactive | Inactive | Inactive | 6 |
| CHEMBL5498 | Muscarinic acetylcholine receptor M3 | Empty | Inactive | Both | 7 |
| CHEMBL4625 | Apoptosis regulator Bcl-X | Empty | Empty | Both | 5 |
| CHEMBL233 | Mu opioid receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL1991 | Inhibitor of nuclear factor kappa B kinase beta subunit | Empty | Empty | Inactive | 7.5 |
| CHEMBL2283 | Carbonic anhydrase II | Active | Active | Active | 6 |
| CHEMBL5077 | Butyrylcholinesterase | Empty | Empty | Inactive | 6 |
| CHEMBL2056 | Dopamine D1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL4828 | Synaptic vesicular amine transporter | Inactive | Inactive | Inactive | 6 |
| CHEMBL231 | Histamine H1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL219 | Dopamine D4 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL2487 | Beta amyloid A4 protein | Empty | Empty | Inactive | 6 |
| CHEMBL1824 | Receptor protein-tyrosine kinase erbB-2 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL3969 | Carbonic anhydrase VB | Empty | Empty | Inactive | 6 |
| CHEMBL1907594 | Neuronal acetylcholine receptor; alpha3/beta4 | Empty | Inactive | Both | 5 |
| CHEMBL2652 | Phosphodiesterase 2A | Inactive | Inactive | Inactive | 6 |
| CHEMBL3202 | Prolyl endopeptidase | Empty | Empty | Both | 6 |
| CHEMBL3571 | Cannabinoid CB1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL5896 | Lysine-specific demethylase 4A | Inactive | Inactive | Inactive | 6 |
| CHEMBL1907595 | Neuronal acetylcholine receptor; alpha4/beta4 | Empty | Inactive | Inactive | 5 |
| CHEMBL1825 | TNF-alpha | Empty | Empty | Inactive | 6 |
| CHEMBL3798 | Calcitonin gene-related peptide type 1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL218 | Cannabinoid CB1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL224 | Serotonin 2a (5-HT2a) receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL6031 | Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 | Inactive | Inactive | Inactive | 6 |
| CHEMBL4801 | Caspase-1 | Empty | Empty | Inactive | 6 |
| CHEMBL2189121 | GTPase KRas | Empty | Inactive | Inactive | 6 |
| CHEMBL4430 | Cytochrome P450 17A1 | Empty | Empty | Both | 6 |
| CHEMBL3313832 | Lysine-specific demethylase 4B | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL2111432 | PI3-kinase p110-delta/p85-alpha | Inactive | Inactive | Inactive | 6 |
| CHEMBL4408 | Phosphodiesterase 8B | Empty | Empty | Inactive | 6 |
| CHEMBL3429 | Estrogen-related receptor alpha | Empty | Empty | Both | 7 |
| CHEMBL1941 | Histamine H2 receptor | Empty | Empty | Both | 7 |
| CHEMBL208 | Progesterone receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL220 | Acetylcholinesterase | Inactive | Inactive | Inactive | 6 |
| CHEMBL4150 | Enoyl-acyl-carrier protein reductase | Inactive | Inactive | Both | 6 |
| CHEMBL234 | Dopamine D3 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1809 | Dihydrofolate reductase | Empty | Empty | Both | 6 |
| CHEMBL1835 | Thromboxane-A synthase | Inactive | Inactive | Inactive | 6 |
| CHEMBL3788 | Serine/threonine-protein kinase PLK4 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL1821 | Muscarinic acetylcholine receptor M4 | Inactive | Inactive | Inactive | 7 |
| CHEMBL4018 | Neuropeptide Y receptor type 2 | Inactive | Inactive | Inactive | 7 |
| CHEMBL2327 | Neurokinin 2 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1907591 | Neuronal acetylcholine receptor; alpha4/beta4 | Active | Active | Active | 5 |
| CHEMBL2695 | Focal adhesion kinase 1 | Empty | Inactive | Inactive | 7.5 |
| CHEMBL2326 | Carbonic anhydrase VII | Empty | Active | Active | 6 |
| CHEMBL3776 | Caspase-8 | Inactive | Inactive | Inactive | 6 |
| CHEMBL1944495 | Proteasome subunit beta type-9 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3004 | Multidrug resistance-associated protein 1 | Empty | Empty | Empty | 6 |
| CHEMBL4780 | Acetylcholinesterase | Empty | Empty | Both | 6 |
| CHEMBL4794 | Vanilloid receptor | Empty | Empty | Inactive | 5 |
| CHEMBL235 | Peroxisome proliferator-activated receptor gamma | Inactive | Inactive | Inactive | 7 |
| CHEMBL1983 | Serotonin 1d (5-HT1d) receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL1798 | Cysteinyl leukotriene receptor 1 | Empty | Empty | Inactive | 7 |
| CHEMBL1968 | Epoxide hydrolase 1 | Empty | Empty | Inactive | 6 |
| CHEMBL5932 | LIM domain kinase 2 | Inactive | Inactive | Both | 7.5 |
| CHEMBL3199 | Acetylcholinesterase | Inactive | Inactive | Inactive | 6 |
| CHEMBL1942 | Alpha-2b adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL237 | Kappa opioid receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL223 | Alpha-1d adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1822 | Inosine-5′-monophosphate dehydrogenase 1 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3012 | Phosphodiesterase 7A | Inactive | Inactive | Inactive | 6 |
| CHEMBL3589 | Adenosine kinase | Inactive | Inactive | Inactive | 6 |
| CHEMBL5113 | Orexin receptor 1 | Inactive | Inactive | Inactive | 7 |
| CHEMBL5891 | Protein arginine N-methyltransferase 3 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3991 | Coagulation factor VII | Empty | Active | Active | 6 |
| CHEMBL1163125 | Bromodomain-containing protein 4 | Empty | Active | Active | 6 |
| CHEMBL4768 | Acetylcholinesterase | Empty | Active | Both | 6 |
| CHEMBL4973 | Excitatory amino acid transporter 2 | Empty | Empty | Both | 6 |
| CHEMBL222 | Norepinephrine transporter | Inactive | Inactive | Inactive | 6 |
| CHEMBL236 | Delta opioid receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL4608 | Melanocortin receptor 5 | Inactive | Inactive | Inactive | 7 |
| CHEMBL1957 | Insulin-like growth factor I receptor | Empty | Inactive | Both | 7.5 |
| CHEMBL4191 | Monoglyceride lipase | Empty | Inactive | Inactive | 6 |
| CHEMBL3371 | Serotonin 6 (5-HT6) receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3403 | Butyrylcholinesterase | Inactive | Inactive | Inactive | 6 |
| CHEMBL2034 | Glucocorticoid receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3464 | Nitric oxide synthase, inducible | Empty | Active | Both | 6 |
| CHEMBL286 | Renin | Inactive | Inactive | Inactive | 6 |
| CHEMBL4860 | Apoptosis regulator Bcl-2 | Empty | Active | Both | 5 |
| CHEMBL251 | Adenosine A2a receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL4653 | Dipeptidyl peptidase IV | Inactive | Inactive | Inactive | 6 |
| CHEMBL245 | Muscarinic acetylcholine receptor M3 | Inactive | Inactive | Inactive | 7 |
| CHEMBL1075132 | Heat shock protein 75 kDa, mitochondrial | Empty | Active | Both | 6 |
| CHEMBL1850 | Dopamine D5 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL2007625 | Isocitrate dehydrogenase [NADP] cytoplasmic | Inactive | Inactive | Inactive | 6 |
| CHEMBL325 | Histone deacetylase 1 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3048 | Nitric-oxide synthase, brain | Inactive | Inactive | Inactive | 6 |
| CHEMBL2424 | Glyoxalase I | Empty | Empty | Active | 6 |
| CHEMBL319 | Alpha-1a adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3706 | ADAM17 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3060 | Glycine transporter 2 | Empty | Empty | Empty | 6 |
| CHEMBL1628481 | Apelin receptor | Empty | Empty | Inactive | 7 |
| CHEMBL2140 | Tryptophan 2,3-dioxygenase | Empty | Inactive | Inactive | 6 |
| CHEMBL4531 | Galectin-3 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3510 | Carbonic anhydrase XIV | Empty | Inactive | Inactive | 6 |
| CHEMBL2163176 | Lysine-specific demethylase 5C | Empty | Inactive | Both | 6 |
| CHEMBL4530 | Coagulation factor XIII | Inactive | Inactive | Inactive | 6 |
| CHEMBL1795101 | Peptide deformylase | Empty | Empty | Inactive | 6 |
| CHEMBL4040 | MAP kinase ERK2 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL2431 | Serine/threonine-protein kinase AKT2 | Empty | Inactive | Both | 7.5 |
| CHEMBL2366504 | Structural capsid protein | Inactive | Inactive | Inactive | 6 |
| CHEMBL278 | Integrin alpha-4 | Empty | Empty | Both | 6.5 |
| CHEMBL244 | Coagulation factor X | Inactive | Inactive | Inactive | 6 |
| CHEMBL4685 | Indoleamine 2,3-dioxygenase | Empty | Empty | Both | 6 |
| CHEMBL287 | Sigma opioid receptor | Inactive | Inactive | Inactive | 6 |
| CHEMBL4478 | Voltage-gated N-type calcium channel alpha-1B subunit | Empty | Inactive | Inactive | 5 |
| CHEMBL3471 | Human immunodeficiency virus type 1 integrase | Empty | Inactive | Inactive | 6 |
| CHEMBL2035 | Muscarinic acetylcholine receptor M5 | Inactive | Inactive | Inactive | 7 |
| CHEMBL3459 | Serotonin 1b (5-HT1b) receptor | Empty | Inactive | Both | 6.5 |
| CHEMBL4336 | Prostanoid EP3 receptor | Empty | Empty | Both | 7 |
| CHEMBL1293197 | Acidic mammalian chitinase | Empty | Inactive | Both | 6 |
| CHEMBL3991501 | Isocitrate dehydrogenase [NADP], mitochondrial | Empty | Inactive | Inactive | 6 |
| CHEMBL4644 | Melanocortin receptor 3 | Inactive | Inactive | Inactive | 7 |
| CHEMBL246 | Beta-3 adrenergic receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL252 | Endothelin receptor ET-A | Empty | Empty | Empty | 7 |
| CHEMBL3922 | Methionine aminopeptidase 2 | Empty | Empty | Both | 6 |
| CHEMBL332 | Matrix metalloproteinase-1 | Empty | Empty | Inactive | 6 |
| CHEMBL326 | Alpha-1d adrenergic receptor | Empty | Empty | Active | 7 |
| CHEMBL4718 | MAP kinase-interacting serine/threonine-protein kinase MNK1 | Empty | Empty | Active | 7.5 |
| CHEMBL1795117 | Histone-lysine N-methyltransferase, H3 lysine-79 specific | Inactive | Inactive | Inactive | 6 |
| CHEMBL5163 | Sodium channel protein type III alpha subunit | Active | Active | Active | 5 |
| CHEMBL1795116 | Protein arginine N-methyltransferase 5 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3710 | Prostanoid EP3 receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL5413 | Metastin receptor | Empty | Empty | Inactive | 7 |
| CHEMBL5375 | Hepatitis C virus NS5B RNA-dependent RNA polymerase | Empty | Empty | Both | 6 |
| CHEMBL333 | Matrix metalloproteinase-2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL2397 | Acetyl-CoA carboxylase 1 | Active | Active | Both | 6 |
| CHEMBL2208 | MAP kinase-activated protein kinase 2 | Empty | Empty | Both | 7.5 |
| CHEMBL3880 | Heat shock protein HSP 90-alpha | Empty | Empty | Both | 6 |
| CHEMBL4123 | Neurotensin receptor 1 | Inactive | Inactive | Inactive | 7 |
| CHEMBL1926 | Dihydrofolate reductase | Empty | Empty | Both | 6 |
| CHEMBL284 | Dipeptidyl peptidase IV | Inactive | Inactive | Inactive | 6 |
| CHEMBL5017 | Serotonin 4 (5-HT4) receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL280 | Matrix metalloproteinase 13 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3884 | Sodium/glucose cotransporter 2 | Empty | Inactive | Both | 6 |
| CHEMBL3108639 | Cat eye syndrome critical region protein 2 | Empty | Both | Both | 6 |
| CHEMBL2366517 | Protease | Empty | Empty | Inactive | 6 |
| CHEMBL3933 | Prostanoid DP receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3072 | Androgen receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL6136 | Lysine-specific histone demethylase 1 | Empty | Inactive | Inactive | 6 |
| CHEMBL2095194 | Coagulation factor VII/tissue factor | Empty | Empty | Active | 6 |
| CHEMBL4523 | Serine/threonine-protein kinase PIM2 | Empty | Inactive | Inactive | 7.5 |
| CHEMBL2147 | Serine/threonine-protein kinase PIM1 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL256 | Adenosine A3 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3649 | Xanthine dehydrogenase | Inactive | Inactive | Inactive | 6 |
| CHEMBL242 | Estrogen receptor beta | Inactive | Inactive | Inactive | 7 |
| CHEMBL4683 | Fibroblast activation protein alpha | Inactive | Inactive | Inactive | 6 |
| CHEMBL3305 | Testis-specific androgen-binding protein | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL2966 | Adenosine deaminase | Active | Active | Active | 6 |
| CHEMBL1741208 | NACHT, LRR and PYD domains-containing protein 3 | Empty | Empty | Both | 6 |
| CHEMBL5979 | Alkaline phosphatase, tissue-nonspecific isozyme | Inactive | Inactive | Both | 6 |
| CHEMBL2094128 | Cyclin-dependent kinase 2/cyclin A | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL268 | Cathepsin K | Inactive | Inactive | Inactive | 6 |
| CHEMBL254 | Phosphodiesterase 4A | Inactive | Inactive | Inactive | 6 |
| CHEMBL1841 | Tyrosine-protein kinase FYN | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL5366 | Poly [ADP-ribose] polymerase 2 | Empty | Empty | Both | 6 |
| CHEMBL4078 | Acetylcholinesterase | Inactive | Inactive | Inactive | 6 |
| CHEMBL1795139 | Transmembrane protease serine 6 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3501 | Cholecystokinin A receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL4508 | Glutaminyl-peptide cyclotransferase | Empty | Active | Active | 6 |
| CHEMBL1075269 | Adenosine A3 receptor | Empty | Active | Both | 7 |
| CHEMBL2622 | Aldose reductase | Empty | Empty | Both | 6 |
| CHEMBL335 | Protein-tyrosine phosphatase 1B | Empty | Empty | Inactive | 6 |
| CHEMBL2434 | Interleukin-8 receptor B | Empty | Empty | Inactive | 7 |
| CHEMBL321 | Matrix metalloproteinase 9 | Empty | Empty | Both | 6 |
| CHEMBL309 | Muscarinic acetylcholine receptor M2 | Inactive | Inactive | Both | 7 |
| CHEMBL5373 | Cannabinoid CB2 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL4086 | Prostanoid EP4 receptor | Active | Active | Active | 7 |
| CHEMBL4657 | Dipeptidyl peptidase VIII | Empty | Empty | Inactive | 6 |
| CHEMBL255 | Adenosine A2b receptor | Empty | Empty | Inactive | 7 |
| CHEMBL269 | Delta opioid receptor | Empty | Active | Active | 7 |
| CHEMBL5763 | Cholinesterase | Inactive | Inactive | Inactive | 6 |
| CHEMBL2781 | Sodium/hydrogen exchanger 1 | Empty | Inactive | Both | 6 |
| CHEMBL3883328 | Casein kinase II alpha'/beta | Inactive | Inactive | Both | 6.5 |
| CHEMBL3486 | Dihydroorotate dehydrogenase | Inactive | Inactive | Inactive | 6 |
| CHEMBL4699 | Isoprenylcysteine carboxyl methyltransferase | Empty | Inactive | Inactive | 6 |
| CHEMBL264 | Histamine H3 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL258 | Tyrosine-protein kinase LCK | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL1865 | Histone deacetylase 6 | Empty | Empty | Inactive | 6 |
| CHEMBL2411 | Serotonin 3a (5-HT3a) receptor | Empty | Empty | Both | 6.5 |
| CHEMBL4074 | Angiotensin-converting enzyme | Empty | Empty | Empty | 6 |
| CHEMBL2363 | Dihydrofolate reductase | Empty | Empty | Both | 6 |
| CHEMBL338 | Dopamine transporter | Inactive | Inactive | Inactive | 6 |
| CHEMBL2304404 | Adenosine A1 receptor | Empty | Inactive | Both | 7 |
| CHEMBL2820 | Coagulation factor XI | Empty | Empty | Inactive | 6 |
| CHEMBL3242 | Carbonic anhydrase XII | Empty | Empty | Active | 6 |
| CHEMBL5141 | Cytochrome P450 26A1 | Empty | Empty | Inactive | 6 |
| CHEMBL311 | Glutamate [NMDA] receptor subunit epsilon 2 | Empty | Empty | Active | 5 |
| CHEMBL2176771 | Complement factor D | Empty | Inactive | Both | 6 |
| CHEMBL3714079 | G-protein coupled receptor 84 | Empty | Active | Both | 7 |
| CHEMBL259 | Melanocortin receptor 4 | Inactive | Inactive | Inactive | 7 |
| CHEMBL4465 | Acyl coenzyme A:cholesterol acyltransferase 2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3478 | Phosphodiesterase 5A | Empty | Active | Both | 6 |
| CHEMBL2000 | Plasma kallikrein | Empty | Empty | Inactive | 6 |
| CHEMBL2955 | Sphingosine 1-phosphate receptor Edg-5 | Empty | Empty | Active | 7 |
| CHEMBL3038482 | DNA gyrase | Empty | Empty | Empty | 6 |
| CHEMBL2016 | Coagulation factor IX | Empty | Inactive | Inactive | 6 |
| CHEMBL2002 | Inosine-5′-monophosphate dehydrogenase 2 | Empty | Empty | Inactive | 6 |
| CHEMBL5023 | p53-binding protein Mdm-2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL4329 | Kappa opioid receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1906 | Serine/threonine-protein kinase RAF | Empty | Active | Active | 7.5 |
| CHEMBL3650 | Fibroblast growth factor receptor 1 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL3081 | Aldose reductase | Inactive | Inactive | Both | 6 |
| CHEMBL4077 | Melanocortin receptor 1 | Inactive | Inactive | Inactive | 7 |
| CHEMBL1899 | Serotonin 3a (5-HT3a) receptor | Inactive | Inactive | Inactive | 5 |
| CHEMBL1898 | Serotonin 1b (5-HT1b) receptor | Empty | Empty | Active | 7 |
| CHEMBL4062 | Calpain 1 | Empty | Inactive | Inactive | 6 |
| CHEMBL1867 | Alpha-2a adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL299 | Protein kinase C alpha | Empty | Empty | Active | 7.5 |
| CHEMBL3321 | Monoglyceride lipase | Empty | Empty | Both | 6 |
| CHEMBL1921666 | DNA gyrase subunit B | Empty | Inactive | Both | 6 |
| CHEMBL3632452 | Mucosa-associated lymphoid tissue lymphoma translocation protein 1 | Empty | Empty | Both | 6 |
| CHEMBL1075317 | WD repeat-containing protein 5 | Empty | Active | Active | 6 |
| CHEMBL4462 | NAD-dependent deacetylase sirtuin 2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3655 | Tyrosine-protein kinase SRC | Inactive | Inactive | Both | 6.5 |
| CHEMBL2096912 | Protein farnesyltransferase | Active | Active | Both | 6 |
| CHEMBL2169736 | Tyrosyl-DNA phosphodiesterase 2 | Empty | Empty | Both | 6 |
| CHEMBL276 | Muscarinic acetylcholine receptor M1 | Active | Active | Active | 7 |
| CHEMBL3912 | Carbonic anhydrase XIII | Inactive | Inactive | Inactive | 6 |
| CHEMBL4072 | Cathepsin B | Empty | Empty | Both | 6 |
| CHEMBL302 | Adenosine A2a receptor | Empty | Active | Active | 7 |
| CHEMBL3286 | Urokinase-type plasminogen activator | Inactive | Inactive | Inactive | 6 |
| CHEMBL1889 | Vasopressin V1a receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1916 | Alpha-2c adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1914 | Butyrylcholinesterase | Empty | Empty | Inactive | 6 |
| CHEMBL2094135 | Gamma-secretase | Empty | Inactive | Inactive | 5 |
| CHEMBL1900 | Aldose reductase | Empty | Active | Active | 6 |
| CHEMBL249 | Neurokinin 1 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3130 | PI3-kinase p110-delta subunit | Active | Active | Active | 6 |
| CHEMBL275 | Phosphodiesterase 4B | Empty | Empty | Both | 6 |
| CHEMBL329 | Type-1A angiotensin II receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL2414 | C–C chemokine receptor type 4 | Empty | Empty | Inactive | 7 |
| CHEMBL2372 | Catechol O-methyltransferase | Empty | Active | Active | 6.5 |
| CHEMBL315 | Alpha-1b adrenergic receptor | Empty | Empty | Inactive | 7 |
| CHEMBL5145 | Serine/threonine-protein kinase B-raf | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL2617 | Tryptase beta-1 | Empty | Active | Both | 6 |
| CHEMBL3247 | HMG-CoA reductase | Empty | Empty | Inactive | 6 |
| CHEMBL3535 | Phosphodiesterase 9A | Inactive | Inactive | Inactive | 6 |
| CHEMBL2830 | Voltage-gated L-type calcium channel alpha-1C subunit | Empty | Active | Both | 5 |
| CHEMBL2176774 | Bromodomain-containing protein 1 | Inactive | Inactive | Inactive | 6 |
| CHEMBL1875 | Serotonin 4 (5-HT4) receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL1849 | Enoyl-[acyl-carrier-protein] reductase | Empty | Empty | Both | 6 |
| CHEMBL260 | MAP kinase p38 alpha | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL2575 | Dihydrofolate reductase | Empty | Empty | Inactive | 6 |
| CHEMBL274 | C–C chemokine receptor type 5 | Inactive | Inactive | Inactive | 7 |
| CHEMBL5568 | Proto-oncogene tyrosine-protein kinase ROS | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL2150837 | ATPase family AAA domain-containing protein 2 | Inactive | Inactive | Both | 6 |
| CHEMBL248 | Leukocyte elastase | Inactive | Inactive | Inactive | 6 |
| CHEMBL1901 | Cholecystokinin A receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3864 | Protein-tyrosine phosphatase 2C | Empty | Empty | Both | 6 |
| CHEMBL1929 | Xanthine dehydrogenase | Empty | Inactive | Inactive | 6 |
| CHEMBL2094108 | Protein farnesyltransferase | Empty | Inactive | Both | 6 |
| CHEMBL3797017 | Histone deacetylase 8 | Empty | Empty | Empty | 6 |
| CHEMBL1907603 | Glutamate NMDA receptor; GRIN1/GRIN2B | Empty | Empty | Both | 5 |
| CHEMBL3085613 | DNA gyrase subunit B | Empty | Inactive | Inactive | 6 |
| CHEMBL4361 | Induced myeloid leukemia cell differentiation protein Mcl-1 | Empty | Empty | Both | 6 |
| CHEMBL3712907 | Transmembrane domain-containing protein TMIGD3 | Inactive | Inactive | Inactive | 6 |
| CHEMBL1966 | Dihydroorotate dehydrogenase | Empty | Empty | Both | 6 |
| CHEMBL4822 | Beta-secretase 1 | Empty | Inactive | Inactive | 6 |
| CHEMBL5282 | Cytochrome P450 2A6 | Inactive | Inactive | Inactive | 6 |
| CHEMBL213 | Beta-1 adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3142 | DNA-dependent protein kinase | Empty | Inactive | Inactive | 7.5 |
| CHEMBL5137 | Metabotropic glutamate receptor 2 | Empty | Active | Active | 7 |
| CHEMBL5122 | Discoidin domain-containing receptor 2 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL3023 | Sphingosine kinase 2 | Inactive | Inactive | Both | 6 |
| CHEMBL2329 | Dihydrofolate reductase | Empty | Inactive | Both | 6.5 |
| CHEMBL3157 | Bradykinin B2 receptor | Empty | Empty | Inactive | 7 |
| CHEMBL1250375 | NADPH oxidase 4 | Inactive | Inactive | Inactive | 6 |
| CHEMBL206 | Estrogen receptor alpha | Empty | Inactive | Inactive | 7 |
| CHEMBL2189117 | Polycomb protein EED | Inactive | Inactive | Inactive | 6 |
| CHEMBL2288 | Peptidyl-prolyl cis–trans isomerase NIMA-interacting 1 | Empty | Active | Both | 6 |
| CHEMBL1781 | DNA topoisomerase I | Empty | Empty | Both | 6 |
| CHEMBL4835 | l-lactate dehydrogenase A chain | Empty | Empty | Inactive | 6 |
| CHEMBL210 | Beta-2 adrenergic receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL238 | Dopamine transporter | Inactive | Inactive | Inactive | 6 |
| CHEMBL2424504 | Lysine-specific demethylase 5A | Inactive | Inactive | Inactive | 6 |
| CHEMBL5493 | Free fatty acid receptor 2 | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL2069156 | Kelch-like ECH-associated protein 1 | Empty | Empty | Both | 6 |
| CHEMBL402 | HMG-CoA reductase | Inactive | Inactive | Inactive | 6 |
| CHEMBL1255150 | G-protein coupled bile acid receptor 1 | Inactive | Inactive | Inactive | 7 |
| CHEMBL4029 | Interleukin-8 receptor A | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL4015 | C–C chemokine receptor type 2 | Inactive | Inactive | Inactive | 7 |
| CHEMBL4940 | l-lactate dehydrogenase B chain | Empty | Active | Active | 6 |
| CHEMBL1804 | Somatostatin receptor 2 | Inactive | Inactive | Inactive | 7 |
| CHEMBL211 | Muscarinic acetylcholine receptor M2 | Inactive | Inactive | Inactive | 7 |
| CHEMBL3137262 | LSD1/CoREST complex | Empty | Empty | inactive | 6 |
| CHEMBL205 | Carbonic anhydrase II | Empty | Empty | Inactive | 6 |
| CHEMBL4607 | Angiotensin II type 2 (AT-2) receptor | Empty | Empty | Empty | 6.5 |
| CHEMBL3815 | Squalene synthetase | Empty | Empty | Both | 6 |
| CHEMBL3356 | Cytochrome P450 1A2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL1907601 | Cyclin-dependent kinase 4/cyclin D1 | Empty | Inactive | Inactive | 7.5 |
| CHEMBL4398 | Purinergic receptor P2Y2 | Empty | Active | Active | 7 |
| CHEMBL3385 | MAP kinase ERK1 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL3959 | Quinone reductase 2 | Inactive | Inactive | Both | 6 |
| CHEMBL3024 | Serine/threonine-protein kinase PLK1 | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL4777 | Neuropeptide Y receptor type 1 | Empty | Inactive | Inactive | 7 |
| CHEMBL2104 | P2X purinoceptor 4 | Empty | Active | Both | 5 |
| CHEMBL3774298 | Histone acetyltransferase KAT6A | Empty | Inactive | Inactive | 6 |
| CHEMBL1801 | Plasminogen | Inactive | Inactive | Inactive | 6 |
| CHEMBL4979 | Sodium/glucose cotransporter 1 | Empty | Inactive | Inactive | 6 |
| CHEMBL1829 | Histone deacetylase 3 | Inactive | Inactive | Inactive | 6 |
| CHEMBL3780 | Small conductance calcium-activated potassium channel protein 3 | Inactive | Inactive | Inactive | 6.5 |
| CHEMBL3623 | Quinone reductase 1) | Inactive | Inactive | Inactive | 6 |
| CHEMBL228 | Serotonin transporter | Inactive | Inactive | Inactive | 6 |
| CHEMBL4414 | Plasmepsin 2 | Inactive | Inactive | Inactive | 6 |
| CHEMBL4372 | Anthrax lethal factor | Empty | Inactive | Inactive | 6 |
| CHEMBL1907604 | Glutamate NMDA receptor; GRIN1/GRIN2A | Inactive | Inactive | Inactive | 5 |
| CHEMBL4358 | Arachidonate 15-lipoxygenase | Empty | Empty | Empty | 6 |
| CHEMBL2073 | Tyrosine-protein kinase YES | Active | Active | Active | 6.5 |
| CHEMBL1977 | Vitamin D receptor | Empty | Inactive | Inactive | 7 |
| CHEMBL3430892 | Integrin alpha-V/beta-8 | Empty | Active | Both | 6.5 |
| CHEMBL3594 | Carbonic anhydrase IX | Inactive | Inactive | Inactive | 6 |
| CHEMBL4204 | MAP kinase signal-integrating kinase 2 | Active | Active | Both | 7.5 |
| CHEMBL4588 | Matrix metalloproteinase 8 | Empty | Empty | Both | 6 |
| CHEMBL1293267 | G-protein coupled receptor 35 | Empty | Inactive | Both | 7 |
| CHEMBL5457 | Dihydrofolate reductase | Empty | Empty | Both | 6 |
| CHEMBL2489 | Prostanoid EP4 receptor | Empty | Empty | Active | 7 |
| CHEMBL3797 | Serine-protein kinase ATM | Inactive | Inactive | Inactive | 7.5 |
| CHEMBL4601 | Tyrosine-protein kinase BRK | Inactive | Inactive | Both | 6.5 |
| CHEMBL217 | Dopamine D2 receptor | Inactive | Inactive | Inactive | 7 |
| CHEMBL3807 | T-cell protein-tyrosine phosphatase | Active | Active | Active | 6 |
| CHEMBL4198 | Inhibitor of apoptosis protein 3 | Empty | Inactive | Inactive | 6 |
| CHEMBL1792 | Somatostatin receptor 5 | Inactive | Inactive | Inactive | 7 |
2.12. Statistical analysis
Statistical analyses were conducted with SPSS version 12.0 software. We calculated the means and standard deviations (SD) for all data. The difference between independent two groups was analyzed using Student's t test. The differences among three and mode groups were analyzed using One-way ANOVA followed by post hoc Tukey's test. P < 0.05 is considered statistically significant.
3. Results
3.1. SAA attenuated cartilage damage in a rat KOA model
Danzikangxi granules has been proved to be effective in KOA management [8,9]. In order to explore the mechanism by which Danzikangxi granules exerts its function, we have analyzed the active ingredients of the Danzikangxi granules using BATMAN database (Score cutoff = 0.89), and the active ingredients-targets-signaling pathway-diseases network has been obtained (Supplementary Fig. 1). We found that multiple components were associated with cell apoptosis-related signaling pathway, such as CASP3 and BCL2, and these signaling pathways were involved in the development of some cancers including breast cancer and colorectal cancer. While the relationship among these components, signaling pathway and KOA was not shown in the network. In recent years, the latent bioprotective capabilities of SAA in KOA has been found, which is one of the active ingredients of the Danzikangxi granules [10]. In our present study, uneven articular surface, hyperplasia of collagen fiber and cartilage calcification were observed in the cartilage tissues of KOA rat, SAA treatment at 10 mg/kg and 20 mg/kg dosages could improve the above damages in a dose-dependent manner (Fig. 1A). Meantime, the positive rate of chondrogenesis marker COL2A1 was significantly downregulated in the cartilage tissues of KOA rat, but this rate was partly rescued after 10 mg/kg or 20 mg/kg SAA treatment (Fig. 1B). The percentages of MMP13- and CASP3-positive chondrocytes were significantly elevated in the cartilage tissues of KOA rat, which were downregulated by SAA treatment at a dosage of 10 mg/kg and 20 mg/kg (Fig. 1C and D). Consistently, the results of RT-qPCR showed that the expression level of COL2A1 mRNA was lower in the cartilage tissues of KOA rat than the sham rat, which was reversed by 10 mg/kg and 20 mg/kg SAA treatment in a dose-dependent manner (Fig. 1E). The gene expression of Aggrecan, a chondrogenesis marker, was also downregulated in the cartilage tissues of KOA rat, and it was increased after SAA treatment in a dose-dependent manner (Fig. 1F). MMP13, MMP3 and CASP3 expression at the mRNA level was evaluated in the cartilage tissues of KOA rats, which was rescued by SAA treatment in a dose-dependent manner (Fig. 1G-I). These results indicated that SAA treatment could effectively improve cartilage damage, collagen deposition and loss of chondrocytes in KOA rats.
Fig. 1.
SAA improved cartilage damage in a rat KOA model. KOA rats were accepted with SAA treatment at a dosages of 10 mg/kg/d and 20 mg/kg/d for 4 weeks. Fresh knee cartilage tissues were taken. Then, (A) Safranin-O/Fast Green staining was performed to analyze cartilage tissue morphology and collagen deposition; (B) The rate of positive COL2A1 expression in chondrocytes was detected by immunohistochemistry; (C–D) The rate of positive MMP13 and CASP3 expression in chondrocytes was detected by immunohistochemistry. (E–I) RT-qPCR was performed to detect the mRNA expression levels of COL2A1, Aggrecan, MMP13, MMP3 and CASP3 in cartilage tissues. All experiments were repeated at least 3 biological replicates. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
3.2. SAA inhibited IL-1β-induced catabolism and apoptosis in chondrocytes
Primary chondrocytes were isolated from healthy rat, and were treated with SAA at a series dosages of 0, 5, 10, 15, 20, 25 and 30 μM. SAA intervention at dosages of 0, 5, 10, 15, 20 and 25 μM had no effect on the cell viability of chondrocytes, but 30 μM SAA treatment suppressed the cell viability of chondrocytes (Fig. 2A). Chondrocytes was treated with 20 μM SAA for 0, 12, 24, 48 and 96 h. The data showed that cell viability began to decrease at 96 h (Fig. 2B). Subsequently, chondrocytes were treated with 10 ng/ml IL-1β alone or in combination with 20 μM SAA for 48 h. The expression of COL2A1 mRNA and Aggrecan mRNA was suppressed in IL-1β-induced chondrocytes, and SAA treatment could promote both COL2A1 mRNA and Aggrecan mRNA expression in IL-1β-induced chondrocytes (Fig. 2C and D). Oppositely, the expression of MMP13 and MMP3 at the mRNA level was enhanced in IL-1β-induced chondrocytes, which was rescued by SAA treatment (Fig. 2E and F). At the protein level, COL2A1 expression was also inhibited but MMP13 expression was enhanced in IL-1β-induced chondrocytes, but SAA treatment could facilitate COL2A1 expression and suppress MMP13 expression in the cells (Fig. 2G-I). Overall, SAA treatment inhibited IL-1β-induced catabolism in chondrocytes. Furthermore, we also detected the level of chondrocyte apoptosis. CASP3 mRNA was found to be highly expressed in IL-1β-induced chondrocytes, but SAA treatment obviously inhibited the expression of it (Fig. 2J). As shown in Fig. 2K–M, the expression levels of CASP3 and Bax were upregulated in IL-1β-induced chondrocytes, but SAA treatment could reduce the expression of them. The expression level of Bcl-2 was downregulated IL-1β-induced chondrocytes, and SAA treatment could enhance the expression of it (Fig. 2K and N). Flow cytometry was also used to detect cell apoptosis, and the data indicated that the apoptosis rate of chondrocytes was higher in IL-1β-treated cells than that in control cells, but SAA combined induction with IL-1β obviously reduced cell apoptosis (Fig. 2O and P). SAA inhibited IL-1β-induced apoptosis in chondrocytes.
Fig. 2.
SAA treatment suppressed IL-1β-induced damages in chondrocyte. Primary chondrocytes were isolated from healthy rats and cultured in vitro. (A) Chondrocytes were treated with SAA for 24 h. The SAA concentrations were increasing from 0 μM, 5 μM, 10 μM, 15 μM, 20 μM, 25 μM–30 μM. CCK-8 assay was used to detect cell viability. (B) Chondrocytes were treated with SAA (25 μM) for 0, 12, 24, 48 and 96 h, and then CCK-8 assay was used to detect cell viability. Subsequently, primary chondrocytes were treated with IL-1β (10 ng/ml) alone or in combination with SAA (25 μM) for 48 h. (C–F) The expression of COL2A1, Aggrecan, MMP13, MMP3 at mRNA level was examined by RT-qPCR. (G–I) The expression of COL2A1 and MMP13 at protein level was detected by Western blot. (J) The expression of CASP3 at mRNA level was examined by RT-qPCR. (K–N) Western blot was carried out to detect the expression of CASP3, Bax and Bcl-2 at protein level. (O and P) Flow cytometry was performed to evaluate the rate of apoptotic cells. All experiments were repeated at least 3 biological replicates. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
3.3. SAA performed its protective function by promoting WDR5 expression
Base on the above results, we can know that SAA contributed cartilage repair in rat KOA model and suppressed IL-1β-induced damages in chondrocytes, while details in the mechanisms of its functions are remain unclear. Hence, we analyzed the potential targets of SAA using ChEMBL (version 27) database, and focused on the top 5 targets. Among the targets, WDR5 has been proven to promote chondrocyte differentiation [12], but its functions and action mechanism in KOA development remain unclear. Here, our data indicated that the expression of WDR5 at mRNA (Fig. 3A) and protein (Fig. 3B and C) levels was significantly downregulated in the cartilage tissues of KOA rat, while SAA treatment at a dosage of 10 mg/kg and 20 mg/kg could rescue the expression of WDR5 mRNA and WDR5 protein. In IL-1β-treated chondrocytes, the expression of both WDR5 mRNA (Fig. 3D) and WDR5 protein (Fig. 3E and F) was also found to be decreased, which was rescued by SAA treatment. The above data suggested that WDR5 participates in the development of KOA and it is a downstream target of SAA. To explore whether SAA performs its function via WDR5, the specific siRNA-3 was chosen for silencing WDR5 expression due to the highest efficiency of interference of it (Supplementary Fig. 2A). Our data indicated that SAA treatment-induced increase in both COL2A1 mRNA and Aggrecan mRNA expression in the chondrocytes treated with IL-1β was reversed after WDR5 silencing (Fig. 3G and H). SAA treatment-induced decrease in both MMP13 mRNA and MMP3 mRNA expression in the IL-1β-treated chondrocytes was also rescued after WDR5 silencing (Fig. 3I and J). At protein level, SAA treatment could facilitate COL2A1 expression and suppress MMP13 expression in IL-1β-treated chondrocytes, which was still rescued by silencing WDR5 (Fig. 3K–M). The inhibition of SAA to IL-1β-induced catabolism in chondrocytes was rescued by silencing WDR5. In addition, CASP3 mRNA (Fig. 3N) and CASP3 protein expression (Fig. 3O and P) were decreased in IL-1β-treated chondrocytes after SAA treatment, which was rescued by silencing WDR5. Inhibiting the expression of WDR5 also rescued SAA treatment-resulted downregulating in Bax and upregulating in Bcl-2 expression in IL-1β-treated chondrocytes (Fig. 3O, Q and R). Results of flow cytometry indicated that the downregulation of apoptosis rate after SAA treatment in IL-1β-treated chondrocytes was rescued by silencing WDR5 (Supplementary Fig. 2B). Overall, the inhibition of SAA to IL-1β-induced apoptosis in chondrocytes was rescued by silencing WDR5.
Fig. 3.
SAA treatment suppressed IL-1β-induced chondrocyte damages by targeting WDR5. KOA rats were accepted with SAA treatment at a dosage of 10 mg/kg/d and 20 mg/kg/d for 4 weeks. Fresh knee cartilage tissues were taken. Then, (A) the expression of WDR5 mRNA was assessed by RT-qPCR; (B–C) the expression of WDR5 protein was detected by Western blot. Primary chondrocytes were treated with IL-1β (10 ng/ml) alone or in combination with SAA (25 μM) for 48 h. Then, (D) RT-qPCR was performed to assess the expression of WDR5 mRNA, and (E–F) Western blot was carried out to evaluate the expression of WDR5 protein. In addition, IL-1β-treated chondrocytes were administrated with SAA alone or in combination with si-WDR5. (G–H) The COL2A1 mRNA and Aggrecan mRNA expression was measured by RT-qPCR. (I–J) The MMP13 mRNA and MMP3 mRNA expression was determined by RT-qPCR. (K–M) The COL2A1 and MMP13 expression at protein level was detected by Western blot. (N) Apoptosis-related CASP3 mRNA expression was assessed by RT-qPCR. (O–R) Western blot was performed to detect the expression of CASP3, Bax and Bcl-2 at protein level. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
3.4. SAA contributed to differentiation of BMSCs into chondrocytes by promoting WDR5 expression
Inducing BMSCs differentiation into chondrocytes and thus attenuating cartilage injury is one of the most effective ways to improve KOA. In the present experiments, we isolated primary BMSCs from healthy or KOA rats, and verified the chondrogenic differentiation ability of the BMSCs through Alcian blue staining (Fig. 4A). The expression of WDR5 mRNA could be significantly upregulated after transfection of the WDR5 expressing plasmid (Fig. 4B). Our data showed that increasing the expression of WDR5 obviously enhanced the differentiation of BMSCs derived from KOA rats into chondrocytes (Fig. 4C). The expression of chondrogenic differentiation markers (SOX9, COL2A1 and Aggrecan) was increased with WDR5 overexpression in the BMSCs derived from KOA rats (Fig. 4D-F). In summary, overexpression of WDR5 facilitated KOA-BMSCs differentiation into chondrocytes.
Fig. 4.
WDR5 facilitated KOA-BMSCs differentiation into chondrocytes. BMSCs were isolated from the cartilage tissues of healthy rats and KOA rats. (A) Alcian blue staining was carried to evaluate the chondrogenic differentiation ability of healthy-BMSCs and KOA-BMSCs. (B) RT-qPCR was performed to detect the expression of WDR5 mRNA in the chondrocytes transfected with WDR5 overexpression plasmid. In addition, WDR5 overexpression plasmid was transfected into the chondrocytes derived from KOA rats, then (C) Alcian blue staining was carried to evaluate the chondrogenic differentiation ability of KOA-BMSCs; (D–F) the expression of SOX9, COL2A1 and Aggrecan at mRNA level was detected by RT-qPCR. All experiments were repeated at least 3 biological replicates. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
Furthermore, our results demonstrated that SAA treatment significantly enhanced the chondrogenic differentiation ability of BMSCs derived from KOA rats, while the differentiation ability of BMSCs was weakened after WDR5 silencing (Fig. 5A). SAA treatment obviously promoted the expression of SOX9 mRNA, COL2A1 mRNA and Aggrecan mRNA in KOA-BMSCs, but they were rescued by silencing WDR5 (Fig. 5B-D). SOX9, COL2A1 and Aggrecan at protein level were also highly expressed in KOA-BMSCs after SAA treatment, which was reversed by silencing WDR5 (Fig. 5E-H). Overall, SAA treatment promoted the differentiation of KOA-BMSCs into chondrocytes via targeting WDR5.
Fig. 5.
Silencing of WDR5 could rescue the promotion of SAA to chondrogenesis of KOA-BMSCs. BMSCs derived from KOA rats were treated with SAA alone or SAA plus si-WDR5. (A) The chondrogenic differentiation ability of cells was examined by Alcian blue staining. (B–D) SOX9, COL2A1 and Aggrecan expression at mRNA level was measured by RT-qPCR. (E–H) SOX9, COL2A1 and Aggrecan expression at protein level was measured by Western blot. All experiments were repeated at least 3 biological replicates. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
4. Discussion
In animal experiments, we found that SAA treatment could effectively attenuate the damage of cartilage tissues in a rat KOA model. In cellular experiments, SAA treatment could suppress the damage of chondrocytes induced by IL-1β and promote the differentiation of BMSCs into chondrocytes. Importantly, SAA exerts its functions via targeting WDR5.
We discovered that SAA, a bioactive polyphenol, is one of the active ingredients of Danzikangxi granules. SAA has been proved to have multiple biological activities, such as anti-inflammation, anti-cancer, anti-apoptosis and anti-oxidant [14]. In the past 5 years, a few studies showed that SAA have therapeutic potential for KOA [10,15]. Our results agree with previous research findings based on experimental evaluations. The results demonstrated that broken articular surface, deposited extracellular matrix and loss of chondrocytes in the cartilage tissues of KOA model rats were improved after SAA treatment. 20 mg/kg/d dose of SAA was more effective than 10 mg/kg/d dose of SAA. In addition, the immunohistochemical results showed that COL2A1 expression was increased, but MMP13 and CASP3 expression was decreased in the cartilage tissues of KOA rat after SAA treatment. COL2A1 is one of the markers of chondrocytes and one of the components of cartilage matrix, its expression is increasing during the differentiation of BMSCs to chondrocytes [16]. MMP13 is one of the catabolic markers of chondrocytes and an extracellular proteolytic enzymes in degradation of cartilage [13]. It has been reported that MMP13 and CASP3 expression is upregulated in KOA model rat [17]. Moreover, the expression of cartilage protein Aggrecan was also increased and the expression of catabolic marker MMP3 was decreased in the cartilage tissues of KOA rat after SAA treatment. From these, SAA treatment effectively alleviated the loss and catabolism of chondrocytes in KOA. In cellular experiments, IL-1β-induced decreasing in COL2A1 and Aggrecan expression and increasing in MMP13 and MMP3 expression were inhibited by SAA treatment. IL-1β-induced increasing in apoptosis rate was also inhibited by SAA treatment. These were again confirmed the inhibition of SAA to chondrocytes apoptosis and catabolism.
The detailed molecular mechanism of action by which SAA performs its function remains unclear. Existing researches only confirm that SAA improve KOA through NF-κB and MAPK signaling pathway [10,15]. Here, our study presented a new mechanism of action of SAA. WDR5 was confirmed as a potential target of SAA by using ChEMBL data. Our data showed that WDR5 expression was increased in both KOA model rats and IL-1β-induced chondrocytes after SAA treatment. Importantly, the promotion of SAA treatment to chondrogenesis markers (COL2A1 and Aggrecan) and the inhibition of SAA treatment to cartilage degradation-related proteins (MMP13 and MMP3) were rescued by silencing WDR5. The inhibition of SAA treatment to cell apoptosis-related proteins (CASP3 and Bax) and the promotion of SAA treatment to anti-apoptotic protein Bcl-2 were also rescued by silencing WDR5. In summary, SAA inhibited apoptosis and catabolism of chondrocytes via facilitating WDR5 expression.
An increasing body of research has suggested that chondrogenic differentiation of BMSCs is an effective therapeutic strategy for KOA. Liu et al. have demonstrated that kartogenin treatment significantly enhance the chondrogenic differentiation of BMSCs, and kartogenin-treated BMSCs had a better effective in attenuating pain in osteoarthritis model [18]. Xu et al. have reported that inhibiting cytokine receptor-like factor 1 could against cartilage damage in osteoarthritis model mice via promoting the differentiation of BMSCs to chondrocytes [19]. Here, we found that increasing WDR5 could facilitate the differentiation of BMSCs derived from KOA model rats to chondrocytes. Same as COL2A1 and Aggrecan, SOX9 also is one of the markers of chondrogenesis. SOX9 is responsible for controlling the expression of COL2A1 and Aggrecan [20]. In the present study, the increased expression of COL2A1, Aggrecan and SOX9 proved again the promotion of WDR5 to chondrogenic differentiation of KOA-BMSCs. In addition, SAA treatment was proved to be helpful for the chondrogenic differentiation of KOA-BMSCs, but it was rescued by silencing WDR5.
5. Conclusion
In conclusion, our results indicated that SAA treatment could effective promote cartilage repair in KOA model rat. Mechanistically, on the one hand, SAA treatment inhibited chondrocytes apoptosis and catabolism via promoting WDR5 expression; on the other hand, SAA treatment enhance chondrogenic differentiation of BMSCs via promoting WDR5 expression. Our study may provide a novel idea for the treatment of KOA and new molecular mechanism of KOA development. Nevertheless, we are aware of several limitations of the study. First and foremost, the regulatory mechanism of SAA to WDR5 remains unclear. Second, WDR5 is critical for the methylation of H3K4 on chromatin catalyzed by the MLL1 complex, whether WDR5 participates in the H3K4 methylation of its downstream targets still is needed to be explored.
Ethics approval and consent to participate
Animal experiments were approved by the ethics committee of Hunan University of Chinese Medicine (APPROVAL NUMBER LLBH-202311070015). We have performed animal experiments depends on the Guide for the Care and Use of Laboratory Animals.
Consent for publication
Not applicable.
Availability of data and materials
All data generated or analyzed are included in this article. Further inquiries can be directed to the corresponding author.
Funding
This work was supported by the Natural Science Foundation of Changsha City (kq2208196), Hunan University of Chinese Medicine Scientific Research Fund Project (2021XJJJ055), the Scientific Research Project of Hunan Traditional Chinese Medicine (B2024078) and Natural Science Foundation of Hunan Province (2025JJ80903 and 2025JJ80920).
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Footnotes
Peer review under responsibility of the Japanese Society for Regenerative Medicine.
Supplementary data to this article can be found online at https://doi.org/10.1016/j.reth.2025.02.010.
Appendix A. Supplementary data
The following are the Supplementary data to this article:
Supplementary figure 1.
Active ingredients of Danzikangxi granules-targets-signaling pathway-disorders network.
Supplementary figure 2.
SAA treatment inhibited IL-1β-induced chondrocyte apoptosis by targeting WDR5. (A) Three different siRNAs targeting WDR5 were transfected into chondrocytes, and the interference efficiency of them was ensured by RT-qPCR. (B) The BMSCs derived from KOA rats were treated with SAA alone or SAA plus si-WDR5. Flow cytometry was carried out to determine the rate of apoptotic chondrocytes. All experiments were repeated at least 3 biological replicates. ∗P < 0.05, ∗∗P < 0.01 and ∗∗∗P < 0.001.
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Data Availability Statement
All data generated or analyzed are included in this article. Further inquiries can be directed to the corresponding author.







