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. 2025 Mar 28;11(13):eadu8400. doi: 10.1126/sciadv.adu8400

Table 1. Description of the labeling pattern in each class.

Class Replication timing* Image† Labeling pattern
IA ~2 hours after the S-phase onset graphic file with name sciadv.adu8400-fx1.jpg Throughout the nucleoplasm, excluded from the nuclear and nucleolar periphery
IB ~4 hours after the S-phase onset graphic file with name sciadv.adu8400-fx2.jpg Throughout the nucleus, including the nuclear and nucleolar periphery
II ~6 hours after the S-phase onset graphic file with name sciadv.adu8400-fx3.jpg Nuclear and nucleolar periphery
III‡ ~7 hours after the S-phase onset graphic file with name sciadv.adu8400-fx4.jpg Large and discrete dot-like foci at the nucleoplasm and periphery
Ambiguous (Fig. 9 and fig. S13) Appears in RIF1-depleted cells with aberrant replication timing graphic file with name sciadv.adu8400-fx5.jpg Not categorized into any of the four classes, and distributed uniformly throughout the nucleus

*Replication timing was determined by cell cycle–synchronized HeLa cells.

†Scale bar, 5 μm.

‡Class III H3.2-Halo also shows diffusive signals that are not colocalized with nascent DNA with EdU incorporation (fig. S5B).