TABLE 1.
Gene and primer | Positionsa | Sequence (5′ to 3′) |
---|---|---|
strR | ||
gs-F | −482 to −463 | GCGGCACGTATGGCCTCCAG |
gs-R | +218 to +199 | CGACATCCTCGCCGGCACTG |
fAa-F | −184 to −162 | AATGAAATCGCTGACAGGCGGTG |
fAa-R | +19 to −4 | AGAGCAATGCTTTCGCACTTCGC |
fAs-F | −127 to −107 | GTTCCGGTCCTCTCCGCCCTG |
fAs-R | +77 to +53 | TGTTCCCTGAAATATGCTCCATTAC |
fBa-F | −394 to −373 | TGAGGCGGGTTCCTGTGCCGCC |
fBa-R | −200 to −223 | AACCGCAGTTTGATTGCCGAATAC |
fBs-F | −344 to −324 | TCCTCGCGTGGTCTTGGGCCG |
fBs-R | −138 to −158 | AGCCAGCGCCTGCGCCCGATC |
pb-F | −225 to −202 | ATGTATTCGGCAATCAAACTGCGG |
pf-R | +68 to +44 | AAATATGCTCCATTACACACCCTTC |
hrdB | ||
hrdB-F | −121 to −98 | TCGGCCCATTTCGTCACGTATGAG |
hrdB-R | +193 to +170 | TCGATGAGCGCCATCACAGACTCG |
adpA | ||
adpA-F | −223 to −200 | AGCCCCCGCATCCCTCCGCGGCGA |
adpA-R | +54 to +31 | ACTCGCGAAGCGCACAGGGAAGTG |
strB1 | ||
sB1-F | −198 to −176 | AGCCCTGAACTCCTGAAGCACTG |
sB1-R | +177 to +156 | AAGGCTCGACTCGGCAGTGCTC |
strD | ||
sD-F | −428 to −404 | TGTTCCCTGAAATATGCTCCATTAC |
sD-R | −8 to −28 | TCCTCGCGTGGTCTTGGGCCG |
strON | ||
sON-F | −252 to −231 | ACGGTACGACCAACTGTCCTCG |
sON-R | +158 to +138 | AACAGGGCCTTCTCCACGGCG |
stsB | ||
sB-F | −244 to −220 | ATCCATGATTTCCCTCGATTTCGAG |
sB-R | +148 to +138 | TCGGCTCCCTGTTCGGCCAGC |
stsC | ||
sC-F | −250 to −230 | ACTGCCGGGCATCGCTGACTC |
sC-R | +158 to +137 | TACGAATCCCGGCCCTGATAGG |
strV | ||
sV-F | −250 to −230 | AAGCGCGAGGCTAGGTCGGTC |
sV-R | +155 to +135 | ACCACCGGGATGAGCGCCTGC |
strU | ||
sU-F | −450 to −431 | AAGCGGCCAACCCGGCCGTC |
sU-R | −34 to −54 | AATGCGACCCGTCGCAGCGGG |
The nucleotide positions for strR, hrdB, adpA, and strB1 are given taking their transcriptional start points as +1. Those for strD, stsB, stsC, strV, and strU are given taking the first letters of their start codons as +1. The nucleotide positions for strO and strN are given taking the first letter of the start codon of strO as +1.