Table 4.
Summary of mutations identified in GI.2 P domain for 2D9 binding analysis
| Construct | Mutated loop sequence | Position in VP60 | No of amino acid changes |
|---|---|---|---|
| L1´ | SASYPGNNATNVLQF | 301–315 (L1) | 7 |
| L2´ | NAGSAIDNPISQVAPDGFPDMSFVPFNGPGIPAA | 319–352 (L2) | 8 |
| L3´ | WNSNSGAPNVTTVQA | 361–375 (L3) | 3 |
| L4´ | TGAPGNLQ | 382–389 (L4) | 2 |
| L5´ | IYAVVTGTAQNPA | 404–416 (L5) | 7 |
| L1´L4´ | SASYPGNNATNVLQF/TGAPGNLQ | 301–315/382–389 | 9 |
| L4´L5´ | TGAPGNLQ/IYAVVTGTAQNPA | 382–389/404–416 | 9 |
| L1´L4´L5´ | SASYPGNNATNVLQF/TGAPGNLQ IYAVVTGTAQNPA | 301–315/382–389/404–416 | 16 |
| N387D | TGAPSDPQ | 387 | 1 |
| N387A | TGAPSAPQ | 387 | 1 |
| AT414-15 | IYGVATGINQTAA | 414–415 | 2 |
Underlined residues indicate amino acid changes with respect to wild type GI.2.