Table 4.
Prediction performance of various scoring schemes, PLS and BWS, based on top 3 scoring windows
| Virus | Known ORIs/Names | PCS | PLS | BWS1 | |
|---|---|---|---|---|---|
| BoHV1 | 111 080–111 300 | (oriS) | 1.75 mu | 1.63 mu | 1.63 mu |
| 126918–127 138 | (oriS) | 1.61 mu | 1.87 mu | 1.87 mu | |
| BoHV4 | 97 143–98 850 | (oriLyt) | — | — | — |
| BoHV5 | 113 206–113 418 | (oriLyt) | — | — | 0.06 mu |
| 129 595–129 807 | (oriLyt) | — | — | 0.07 mu | |
| CeHV1 | 61 592–61 789 | (oriL1) | — | 0.057 mu | 0.057 mu |
| 61 795–61 992 | (oriL2) | — | 0.18 mu | 0.18 mu | |
| 132 795–132 796 | (oriS1) | — | 0.13 mu | 0.13 mu | |
| 132 998–132 999 | (oriS2) | — | 0.0016 mu | 0.0016 mu | |
| 149 425–149 426 | (oriS2) | — | 0.016 mu | 0.016 mu | |
| 149 628–149 629 | (oriS1) | — | 0.11 mu | 0.11 mu | |
| CeHV2 | 61 445–61 542 | (oriL) | — | 0.07 mu | 0.07 mu |
| 129 452–129 623 | (oriS) | — | 0.02 mu | 0.02 mu | |
| 144 386–144 557 | (oriS) | — | 0.17 mu | 0.17 mu | |
| CeHV7 | 109 627–109 646 | — | — | — | |
| 118 613–118 632 | — | — | — | ||
| EBV | 7315–9312 | (oriP) | contains ori | 0.41 mu | 0.41 mu |
| 52 589–53 581 | (oriLyt) | contains ori | 0.067 mu | 0.067 mu | |
| EHV1 | 126 187–126 338 | — | — | — | |
| EHV4 | 73 900–73 919 | (oriL) | — | — | — |
| 119 462–119 481 | (oriS) | — | — | — | |
| 138 568–138 587 | (oriS) | — | — | — | |
| GaHV1 | 24 738–25 005 | (oriL) | — | — | — |
| HCMV | 93 201–94 646 | (oriLyt) | contains ori | 0.055 mu | 0.055 mu |
| HHV6 | 67 617–67 993 | (oriLyt) | — | — | — |
| HHV6b | 68 740–69 581 | (oriLyt) | — | 0.024 mu | — |
| HHV7 | 66 685–67 298 | — | — | — | |
| HSV1 | 62 475 | (oriL) | — | 0.11 mu | 0.11 mu |
| 131 999 | (oriS) | — | 1.41 mu | 1.41 mu | |
| 146 235 | (oriS) | — | 1.42 mu | 1.42 mu | |
| HSV2 | 62 930 | (oriL) | — | — | — |
| 132 760 | (oriS) | — | — | — | |
| 148 981 | (oriS) | — | — | — | |
| RCMV | 75 666–78 970 | (oriLyt) | overlaps ori | 0.62 mu | 0.62 mu |
| SHV1 | 63 848–63 908 | (oriL) | — | — | — |
| 114 393–115 009 | (oriS) | — | — | — | |
| 129 593–130 209 | (oriS) | — | — | — | |
| VZV | 110 087–110 350 | — | 0.094 mu | 0.094 mu | |
| 119 547–119 810 | — | 0.22 mu | 0.22 mu | ||
The table shows the distance between each known origin from the nearest significant palindrome cluster for PCS, or the nearest high scoring window for PLS and BWS1 if the center of the cluster or window is within 2 mu of the origin. For example, one of the top 3 scoring windows under the PLS (and BWS) for RCMV is 0.62 map unit away from the RCMV oriLyt.