Table 3 |.
Top 50 most significant differences in disease genes between cases and controls
| Gene | Time point | Cell Lineage | Effect (Red=upregulated in cases; green=upregulated in controls) | FDR |
|---|---|---|---|---|
| AFF3 | 1 | B Cells | 0.881882 | 3.788E-108 |
| AFF3 | 2 | B Cells | 1.07308 | 8.6754E-24 |
| AFF3 | 1 | CD4 T Cells | 0.850692 | 7.9557E-22 |
| AHI1 | 1 | CD4 T Cells | 1.23272 | 4.816E-27 |
| BACH2 | 2 | CD8 T Cells | 1.12515 | 1.455E-129 |
| BACH2 | 3 | B Cells | 1.09819 | 4.742E-94 |
| BACH2 | 1 | B Cells | 0.939154 | 2.5752E-77 |
| BACH2 | 3 | CD4 T Cells | 1.07144 | 4.0642E-76 |
| BACH2 | 2 | B Cells | 1.06456 | 9.8331E-55 |
| BACH2 | 2 | CD4 T Cells | 1.04161 | 4.9935E-30 |
| CD226 | 2 | Monocyte | 1.32033 | 4.1167E-26 |
| CD6 | 1 | CD4 T Cells | 1.09239 | 1.7086E-20 |
| CD69 | 1 | B Cells | 0.881482 | 1.572E-62 |
| CD69 | 3 | NK Cells | 1.12464 | 2.7492E-40 |
| CD69 | 1 | NK Cells | 0.88699 | 1.5986E-21 |
| DENND1B | 1 | Monocyte | 1.14323 | 9.693E-37 |
| DENND1B | 1 | B Cells | 1.17661 | 4.2708E-24 |
| FYN | 1 | NK Cells | 1.09758 | 1.1124E-34 |
| FYN | 1 | CD4 T Cells | 1.0491 | 7.8605E-29 |
| HLA-DQB1 | 2 | Monocyte | 1.42182 | 3.0407E-44 |
| HLA-DQB1 | 2 | B Cells | 1.19305 | 3.657E-25 |
| HLA-DQB1 | 1 | B Cells | 1.13693 | 1.5765E-21 |
| IFIH1 | 2 | NK Cells | 0.659318 | 5.7183E-91 |
| IFIH1 | 1 | NK Cells | 0.650195 | 1.0135E-72 |
| IFIH1 | 3 | NK Cells | 1.26942 | 2.1223E-28 |
| JAZF1 | 2 | CD8 T Cells | 0.660968 | 2.5189E-49 |
| JAZF1 | 3 | B Cells | 1.19587 | 2.1541E-27 |
| NFKB1 | 1 | B Cells | 0.853393 | 0 |
| NFKB1 | 2 | Monocyte | 0.898239 | 2.013E-178 |
| NFKB1 | 1 | CD4 T Cells | 0.898719 | 5.5342E-93 |
| NFKB1 | 2 | B Cells | 0.92324 | 2.2148E-85 |
| NFKB1 | 1 | Monocyte | 0.93036 | 2.4946E-47 |
| NFKB1 | 3 | CD4 T Cells | 0.951296 | 1.1541E-22 |
| NFKB1 | 2 | CD4 T Cells | 0.953377 | 1.9101E-21 |
| NFKB1 | 1 | CD8 T Cells | 0.93407 | 1.2091E-20 |
| NFKB1 | 2 | NK Cells | 0.93831 | 4.9184E-20 |
| NR4A3 | 1 | B Cells | 0.767656 | 3.979E-110 |
| NR4A3 | 2 | Monocyte | 0.888678 | 1.349E-24 |
| RGS1 | 2 | Monocyte | 0.774416 | 3.3753E-67 |
| RHOH | 1 | B Cells | 0.878026 | 1.8915E-62 |
| STAT4 | 3 | NK Cells | 1.13119 | 3.3902E-60 |
| STAT4 | 2 | Monocyte | 0.787111 | 7.7766E-57 |
| STAT4 | 3 | CD4 T Cells | 1.08251 | 1.9188E-24 |
| STAT4 | 2 | B Cells | 0.848873 | 9.6623E-24 |
| THEMIS | 1 | CD8 T Cells | 0.800418 | 1.4367E-30 |
| TNFAIP3 | 1 | Monocyte | 0.836954 | 2.064E-46 |
| TNFAIP3 | 2 | Monocyte | 0.8774 | 1.9542E-36 |
| TNFAIP3 | 1 | B Cells | 0.853863 | 4.5395E-34 |
| TNFAIP3 | 2 | B Cells | 0.866305 | 1.06E-21 |
| TOX | 2 | CD8 T Cells | 0.803685 | 1.5961E-24 |