Table 3.
Summary of the different regions of chromosomal aberration between non-response and response group.
| Chromosome | Region | R(H)/S(L) | R(L)/S(H) | Accession | Start | Stop | Gene symbol | NCBI gene ID | Name |
|---|---|---|---|---|---|---|---|---|---|
| 2 | 2q37.2 | √ | NC_000002.12 | 234,682,668 | 234,717,764 | LINC01173 | 106,144,537 | Long intergenic non-protein coding RNA 1173 | |
| 4 | 4q32.1 | √ | Noncoding gene | ||||||
| 5 | 5q12.3 | √ | NC_000005.10 | 64,768,918 | 65,018,763 | CWC27 | 10,283 | CWC27 spliceosome associated cyclophilin | |
| 10 | 10q21.3 | √ | NC_000010.10 | 67,672,281 | 69,455,953 | CTNNA3 | 29,119 | Catenin alpha 3 | |
| 10q31.32 | √ | Noncoding gene | |||||||
| 11 | 11p11.2 | √ | Noncoding gene | ||||||
| 11q13.3 | √ | Noncoding gene | |||||||
| 11q14.2 | √ | NC_000011.10 | 86,672,237 | 86,753,297 | ME3-DT | 107,984,427 | |||
| 11q14.1(2) | √ | NC_000011.10 | 78,652,829 | 79,441,030 | TENM4 | 26,011 | Teneurin transmembrane protein 4 | ||
| 16 | 16p11.2 | √ | NC_000011.9 | 31,453,948 | 31,531,169 | IMMP1L | 196,294 | Inner mitochondrial membrane peptidase subunit 1 | |
| 16q22.3 | √ | NC_000011.9 | 73,386,683 | 73,472,119 | RAB6A | 5870 | RAB6A, member RAS oncogene family | ||
| 16q23.3 | √ | NC_000016.10 | 82,626,823 | 83,800,640 | CDH13 | 1012 | Cadherin 13 | ||
| 17 | 17q22 | √ | NC_000017.10 | 57,785,015 | 57,919,616 | VMP1 | 81,671 | Cacuole membrane protein 1 | |
| 21 | 21q21.3 | √ | Noncoding gene | ||||||
| 22 | 22q12.3 | √ | NC_000022.10 | 36,956,904 | 37,099,797 | CACNG2 | 10,369 | Calcium voltage-gated channel auxiliary subunit gamma 2 | |
Chromosomal aberrations were analyzed by MetaboAnalyst program with Log 2 Ratio. A high Log 2 Ratio in was demonstrated in the non-response group, but low in the response group in the following locations: chromosome 2 (2q37.2), 10 (10q31.32), 11 (11q13.3, 11q14.1) and 16 (16q22.3, 16q23.3), Log 2 Ratio in the non-response group was low, but high in the response group in the following locations: chromosome 4 (4q32.1), 5 (5q12.3), 10 (10q21.3), 11 (11p11.2, 11q14.2), 16 (16p11.2), 17q (17q22), 21 (21q21.3) and 22 (22q12.3).