Table 2.
Sequence Variations in the Common Risk Haplotype with Loss of a Hypothetical Consensus Binding Element
| Position and Typeof Variant | NCBI dbSNPAccession No. | Transcription Factor |
| −7359A→C | rs2505990 | CSS(2) |
| −6347G→A | rs2505991 | AP2/SP1, SP1erk |
| −4201G→A | rs2082107 | SP1-YB1, ApoE-B1 |
| −3820C→T | rs2505994 | USF-APP, IgHC.4, NF-mu-E1-CS, GT-2B-RS |
| −3054G→A | rs2505995 | HC5 |
| −2897T→C | rs2505996 | NF-E1, NF-E1.6 |
| −1260T→C | rs2505999 | MEF3_B |
| −719C→T | rs2435366 | SP1erk, AP2/SP1, SP1-TPI(4), SP1-hsp70, hsp70.2, SP1-IE-3.3,4.5 |
| IVS1+2820T→C | rs1864411 | Uteroglobin HS-2.4-C, AP2-TBXAS1 |
| IVS1+2846G→T | rs1864410 | AP2/SP1, SP1-erk1(1), JCV |
| IVS1+3104C→T | rs1864408 | NFI-CS3, ELP/SF1/FT2F1, SF1-CYP21 |
| IVS1+5094T→A | rs2506016 | BPV-E2.CS2, E2-RS1 |
| IVS1+6294T→C | rs2506020 | ETS-1 |
| IVS1+6383−84GG→CC | … | SP1 complement factor, SP1-CS4, HC3 |
| IVS1+6411G→A | … | AP2 CS4 |
| IVS1+6751T→C | rs1897001 | PEA3, IE1.2 |
| IVS1+6813C→T | rs1896999 | Site-I(2) |
| IVS1+7445A→C | rs2506008 | HNF-5 |
| IVS1+9494C→A | rs2506004 | E1AF |
| IVS1+10813A→G | … | Msx1 |
| IVS1−10032C→T | rs2435344 | E2A-CAMLG, E2A, USFAPP |
| IVS1−10017C→T | rs2435345 | SP1-TPI(4), AP-2-β |
| IVS1−7593G→A | rs752975 | GR-MT-IIA |
| IVS1−7298G→A | … | AP2-CS5 |
| IVS1−5791C→T | rs2505541 | AP2-CS5 |
| IVS1−5127C→G | … | TFIID-EIIa |
| IVS1−5038C→T | rs2505539 | Uteroglobin HS-2.4-C, T antigen |
| IVS1−5005A→G | rs2435346 | SP1YB1, MyoD-MCK right site, site F (4,5), AP2-APP |
| IVS1−3748C→T | rs2505537 | AP2-β |
| IVS1−3702T→A | rs2505536 | GR-uteroglobin(1,2), GR/Prconnexin43 |