Table 3.

List of significant SNPs associated with GLS disease severity traits evaluated in four environments under artificial inoculation of Cercospora zeina.

SNP	Chr	Position (bp)	Bin name	MLM-P value	MAF	Effect
Gray leaf spot 1
DT2_153752700	2	153752700	2.06	1.78 × 10−5	0.33	−0.24
DT3_18370709	3	18370709	3.04	1.37 × 10−8	0.29	−0.35
DT3_129473727	3	129473727	3.05	2.77 × 10−4	0.33	0.20
DT4_236484294	4	236484294	4.09	5.49 × 10−7	0.08	−0.45
DT5_77120507	5	77120507	5.03	4.39 × 10−6	0.39	−0.27
DT9_45478343	9	45478343	9.03	1.67 × 10−4	0.24	0.14
DT9_131016039	9	131016039	9.05	9.52 × 10−6	0.50	−0.20
DT10_9375453	10	9375453	10.02	1.47 × 10−5	0.46	0.20
DT10_124625318	10	124625318	10.04	6.96 × 10−7	0.08	0.39
Gray leaf spot 2
DT3_8260307	3	8260307	3.03	8.30 × 10−5	0.10	0.70
DT5_80046482	5	80046482	5.03	2.04 × 10−4	0.30	−0.70
DT6_118742764	6	118742764	6.04	1.50 × 10−4	0.32	0.40
DT10_7310310	10	7310310	10.02	2.13 × 10−4	0.24	−0.45
AUDPC value
DT1_209722581	1	209722581	1.07	2.18 × 10−4	0.36	−2.32
DT1_257413254	1	257413254	1.09	4.11 × 10−5	0.12	5.01
DT2_55324276	2	55324276	2.04	1.41 × 10−4	0.31	−2.93
DT3_226339092	3	226339092	3.09	8.44 × 10−7	0.44	−3.67
DT5_24851058	5	24851058	5.03	1.43 × 10−5	0.15	5.59
DT6_1389517	6	1389517	6.00	1.47 × 10−5	0.22	−3.46
DT6_91304345	6	91304345	6.02	1.32 × 10−4	0.25	−2.81
DT6_165363652	6	165363652	6.08	2.06 × 10−4	0.12	3.44
DT7_100370211	7	100370211	7.02	4.39 × 10−5	0.42	−2.57
DT8_15011837	8	15011837	8.02	9.07 × 10−6	0.23	3.83
DT9_138867161	9	138867161	9.05	1.24 × 10−5	0.50	−2.83

MAF, Minor Allele Frequency, effect- Allele Effect, MLM P-value- probability value for the mixed linear model, GLS disease severity, and AUDPC- area under disease progress curve values under artificial inoculation of GLS conditions; Position - The physical position of the SNP (Ref Gen_v3 of B73).