Table 5.
Candidate genes for GLS disease severity traits and other agronomic traits under artificial inoculation of GLS conditions.
| Trait | SNP | Chr | Position (bp) | Gene_name | Annotation |
|---|---|---|---|---|---|
| GLS1 (77 DAP) | DT4_236484294 | 4 | 236484294 | Zm00001d053613 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| GLS1 (77 DAP) | DT9_45478343 | 9 | 45478343 | Zm00001d045883 | ADP/ATP carrier protein 1 mitochondrial |
| GLS1 (77 DAP) | DT10_9375453 | 10 | 9375453 | Zm00001d023539 | protein_coding |
| GLS2 (105 DAP) | DT5_80046482 | 5 | 80046482 | Zm00001d015224 | Salicylate/benzoate carboxyl methyltransferase |
| AUDPC | DT5_24851058 | 5 | 24851058 | Zm00001d013920 | Phosphatidylinositol 4-phosphate 5-kinase 9 |
| AUDPC | DT6_1389517 | 6 | 1389517 | Zm00001d034998 | Receptor homology region transmembrane domain- and RING domain-containing protein 2 |
| AUDPC | DT8_15011837 | 8 | 15011837 | Zm00001d008623 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 |
| AUDPC | DT9_138867161 | 9 | 138867161 | Zm00001d047673 | DUF4378 domain protein |
| AD | DT3_1407684 | 3 | 1407684 | Zm00001d039305 | RNA polymerase I-associated factor PAF67 |
| AD | DT5_80046482 | 5 | 80046482 | Zm00001d015224 | Salicylate/benzoate carboxyl methyltransferase |
| AD | DT6_114255122 | 6 | 114255122 | Zm00001d037159 | Os05g0597150 protein |
| AD | DT9_76104516 | 9 | 76104516 | Zm00001d046243 | Putative ferroportin-domain family protein |
| SD | DT1_36755457 | 1 | 36755457 | Zm00001d028486 | Chemocyanin |
| SD | DT1_160031116 | 1 | 160031116 | Zm00001d030795 | Plant calmodulin-binding protein-related |
| SD | DT3_1469626 | 3 | 1469626 | Zm00001d039313 | protein_coding |
| SD | DT6_85907826 | 6 | 85907826 | Zm00001d036370 | protein_coding |
| SD | DT8_63984569 | 8 | 63984569 | Zm00001d009426 | Mov34/MPN/PAD-1 family protein |
| PH | DT2_11667280 | 2 | 11667280 | Zm00001d002390 | DNA ligase 4 |
| PH | DT2_27642609 | 2 | 27642609 | Zm00001d002942 | Tubulin-folding cofactor B |
| PH | DT2_27774525 | 2 | 27774525 | Zm00001d002944 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase 67 kDasubunit |
| EH | DT7_5660772 | 7 | 5660772 | Zm00001d018802 | protein_coding |
GLS1 and GLS2 correspond to disease severity data collected for GLS at 77 and 105 days after planting, respectively; AUDPC, area under disease progress curve; AD, anthesis date; SD, silking date; PH, plant height; EH, ear height.