Table 2.
Gene ontology (GO) enrichment analysis of the biological processes, molecular functions, and cellular components from the analyzed clusters containing secretome proteins that were regulated by incubation with urate for 24 h.
Cluster 1 (n = 123) |
Cluster 2 (n = 21) |
||||
---|---|---|---|---|---|
Biological process | # of proteins | -log(p-value) | Biological process | # of proteins | -log(p-value) |
inflammatory response regulation | 26 | 6.39 | extracellular matrix protein | 6 | 5.94 |
cellular component organization | 34 | 4.05 | cell adhesion | 9 | 2.52 |
cytokine signaling | 14 | 2.43 | response to wounding | 6 | 2.05 |
RNA processing | 17 | 2.39 | extracellular matrix | 5 | 1.92 |
regulation of proteolysis | 12 | 1.48 | cell projection | 8 | 1.83 |
protein folding | 5 | 1.45 | cell migration | 7 | 1.72 |
Molecular function | # of proteins | -log(p-value) | Molecular Function | # of proteins | -log(p-value) |
cadherin binding | 21 | 11.66 | extracellular matrix | 6 | 4.12 |
cell adhesion molecule binding | 22 | 8.60 | calcium ion binding | 7 | 2.06 |
protein binding | 114 | 7.92 | proteoglycan binding | 3 | 1.95 |
nucleic acid binding | 51 | 5.15 | fibronectin binding | 3 | 1.91 |
actin binding | 15 | 4.45 | peptidase activator activity | 3 | 1.62 |
unfolded protein binding | 6 | 1.81 | laminin interactions | 2 | 1.34 |
Cellular component | # of proteins | -log(p-value) | Cellular component | # of proteins | -log(p-value) |
extracellular space | 78 | 29.44 | extracellular region | 18 | 6.43 |
cytoplasm | 108 | 10.72 | basement membrane | 5 | 4.77 |
focal adhesion | 20 | 9.68 | lysosomal lumen | 4 | 3.28 |
cell junction | 36 | 6.17 | vesicle | 13 | 2.52 |
secretory vesicle | 24 | 6.03 | cell adhesion | 3 | 2.46 |
nuclear lumen | 50 | 4.26 | laminin complex | 2 | 2.25 |