TABLE 1.
EV71 isolates used for phylogenetic analysisa
Isolate | Sampling date (mo/yr) | Clinical feature(s) on admission | Origin
|
Isolate genotype | |
---|---|---|---|---|---|
Patient age (yr) | Specimen | ||||
BrCr-CA-70 | 1970 | Aseptic meningitis | 0.2 | NA | A |
7423-MS-87 | 1987 | Paralytic illness | 1.6 | NA | B |
236-TW-86 | 1986 | HFMD | NA | NA | B |
0756-MAA-97 | 1997 | NA | NA | NA | C |
0731-MAA-97 | 1997 | NA | NA | NA | B |
AJ238447-97 | 1997 | NA | NA | NA | B |
N4643-TW-98 | 4/1998 | Encephalitis (death) | 1.9 | Throat swab | C |
N5033-TW-98 | 6/1998 | Encephalitis (death) | 1.6 | Gastric lavage fluid | C |
N5055-TW-98 | 6/1998 | Encephalitis | 3.0 | Throat swab | C |
N5062-TW-98 | 6/1998 | Herpangina | 0.9 | Stool | C |
N5101-TW-98 | 6/1998 | HFMD | 0.8 | Throat swab | B |
N5157-TW-98 | 6/1998 | HFMD | 6.8 | Throat swab | B |
N5202-TW-98 | 6/1998 | HFMD | 3.3 | Throat swab | C |
N5296-TW-98 | 6/1998 | HFMD | 5.1 | Throat swab | C |
N5385-TW-98 | 7/1998 | HFMD | 1.0 | Throat swab | C |
H0001-TW-98 | 7/1998 | HFMD, CNS symptoms | 0.7 | Stool | C |
N5698-TW-98 | 8/1998 | Meningoencephalitis | 1.8 | Throat swab | C |
N5761-TW-98 | 8/1998 | HFMD, encephalitis | 1.9 | Stool | C |
N5811-TW-98 | 8/1998 | HFMD | 1.9 | Throat swab | C |
H0139-TW-98 | 9/1998 | Meningoencephalitis | 1.6 | Throat swab | C |
N6064-TW-98 | 10/1998 | HFMD | 2.2 | Throat swab | C |
N6071-TW-98 | 10/1998 | HFMD | 3.6 | Throat swab | C |
N6108-TW-98 | 10/1998 | HFMD | 0.7 | Stool | C |
N6128-TW-98 | 10/1998 | Encephalitis | NA | Throat swab | C |
N6174-TW-98 | 10/1998 | Meningoencephalitis | 1.0 | Throat swab | C |
N6182-TW-98 | 10/1998 | HFMD, CNS symptoms | 1.1 | Throat swab | C |
N6252-TW-98 | 10/1998 | HFMD | 2.5 | Throat swab | C |
N6270-TW-98 | 10/1998 | HFMD | 2.6 | Throat swab | C |
N6356-TW-98 | 10/1998 | HFMD, encephalitis (death) | 2.6 | Throat swab | C |
S9086-TW-98 | 10/1998 | Meningitis | 1.6 | Stool | B |
H0358-TW-98 | 12/1998 | HFMD, encephalitis | 1.6 | Stool | C |
H0382-TW-98 | 12/1998 | Enterovirus infection | 1.0 | Throat swab | C |
N7008-TW-99 | 2/1999 | HFMD, CNS symptoms (death) | 2.6 | Stool | B |
N7129-TW-99 | 2/1999 | HFMD, CNS involvement | 1.0 | Throat swab | B |
S0463-TW-99 | 11/1999 | Aseptic meningitis | 2.4 | Throat | B |
S0042-TW-00 | 1/2000 | NA | 0.1 | Stool | B |
N0118-TW-00 | 1/2000 | NA | 2.4 | Throat swab | B |
M0167-TW-00 | 3/2000 | HFMD | 4.5 | Throat swab | B |
M0177-TW-00 | 3/2000 | HFMD | 4.6 | Throat swab | B |
M0200-TW-00 | 3/2000 | HFMD | 0.8 | Throat swab | B |
M0201-TW-00 | 3/2000 | HFMD | 1.0 | Throat swab | B |
M0225-TW-00 | 3/2000 | HFMD | 5.5 | Throat swab | B |
M0226-TW-00 | 3/2000 | HFMD | 4.1 | Throat swab | B |
H0148-TW-00 | 3/2000 | HFMD, acute pharyngitis, asthmatic bronchitis | 2.0 | Throat swab | B |
N1034-TW-00 | 4/2000 | HFMD | 3.5 | Throat swab | B |
N1059-TW-00 | 4/2000 | HFMD, CNS symptoms | 1.2 | Throat swab | B |
M0267-TW-00 | 4/2000 | HFMD | 2.7 | Throat swab | B |
N1554-TW-00 | 5/2000 | CNS symptoms | 1.1 | Throat swab | B |
N1643-TW-00 | 5/2000 | HFMD, CNS involvement | 0.5 | Stool | B |
H0218-TW-00 | 5/2000 | Meningoencephalitis | 2.9 | Stool | B |
N1814-TW-00 | 6/2000 | HFMD, CNS symptoms (death) | 1.1 | Brain stem (autopsy) | B |
M0485-TW-00 | 6/2000 | NA | 1.9 | Throat swab | B |
H0444-TW-00 | 7/2000 | Meningoencephalitis (death) | 1.3 | Stool | B |
H0493-TW-00 | 7/2000 | HFMD, acute gastritis (death) | 1.7 | Throat swab | B |
M0553-TW-00 | 7/2000 | NA | 3.3 | Throat swab | B |
H0575-TW-00 | 9/2000 | HFMD with CNS involvement | 1.4 | Stool | B |
S0296-TW-00 | 9/2000 | HFMD, convulsion, CNS involvement | 1.8 | Stool | B |
S0309-TW-00 | 9/2000 | NA | 4.7 | Throat swab | B |
M0652-TW-00 | 9/2000 | HFMD | 2.9 | Throat swab | B |
The EV71 isolates used for phylogenetic analysis were a random sampling from patients with diverse clinical presentations, ranging from uncomplicated HFMD to encephalitis and death. Abbreviations: CNS, central nervous system; NA, not available.