TABLE 1.
Primers used in this study
| TIGR gene no. or usea | Forward primer (5′-3′) | Reverse primer (5′-3′) | Reference |
|---|---|---|---|
| HP0887 (vacA) | DLHPVacA-4 (ACA ACC GTG ATC ATT CCA GC) | DLHPVacA-3 (ATA CGC TCC ACG TAT TGC) | 1 |
| HP0142 (mutY) | mutY101(+) (AGC GAA GTG ATG AGC CAA CAA AC) | mutY102(−) (AAA GGG CAA ATC GCA CAT TTG GG) | 1 |
| HP0071 (ureI) | Hp71as(−) (GGC AAT GCT AGG ACT TGT) | Hp71S3(+) (TCC CTT AGA TTG CCA ACT AAA CGC) | 1 |
| HP0115 (flaB) | flaB:F (AAG GCA TGC TCG CTA GCG) | flaB:R (TAA TGT CTC TAG CGT CGG) | 1 |
| HP0790 (hsdS5) | 726/790 SRU2 (TTT TGG ACG CTT TCA CAG AA) | 726/790 Hp1SF2 (GCT GGG ATA CCG GCT AAT AA) | (A. Skoglund, personal communication) |
| HP0621 (mutS) | mutS3 (GGC AAA AA ACA AAC CCC TAT G) | mutS486 (CAA ACT TTC ATT CAA AGC) | 12 |
| HP0521 (putative) | CIF301 (CTT AGT GAA ATT AGT TGA AAA ATT G) | R11 (TGA GTT TTT GTG TCA TCA ACA G) | 13 |
| HP0547 (cagA) | CagAV F (AAG GGA ATT GTC TGA TAA) | CagAV R (TGA CAA ACT AGC AGG CAC TT) | This study |
| Region between HP0547 and HP0549 | F69 (AAT GTT AAT ACA AAA GGT GGT TTC) | C2R130 (GCG GCG ATG TGG TTT GG) | 13 |
| HP0954 (rdxA) | rdx1 (GCC ACT CCT TGA ACT TTA ATT TAG G) | rdx4 (CGT TAG GGA TTT TAT TGT ATG CTA C) | 30 |
| HP0527 (cagY), middle region | MRRF (GCT TAC TGA ACC AAC AAA AAG TTC A) | MRRR (CGC TCA AAC CAT CCA AAC ACT TC) | 6 |
| HP0527 (cagY), 5′ region | FRRF (ATG AAT GAA GAA AAC GAT AAA TTG) | FRRR (CAC TTG AAC TTT TTG TTG GTT CAG) | 6 |
| HP0772 (amiA) | amiAF (GCG AGTGGT TAT CGG CTA GCT CC) | amiAR (CTT TCC CCC CAT GCC CAG CGT C) | 8 |
| HP0547 (cagA), repeat region | DUF130 (GGT GTA GGG CAA GCA ACG G) | R66 (TAG AAT CTT TGA GCT TGT CTA TC) | 13 |
| AP-PCR | 1290 (GTGGATGCGA) | 2 | |
| AP-PCR | 1283 (GCGATCCCCA) | 2 | |
| AP-PCR | D8635 (GAG CGG CCA AAG) GGA GCA GAC | 2 |
a
TIGR, The Institute for Genome Research.