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. Author manuscript; available in PMC: 2005 Sep 13.
Published in final edited form as: Bioinformatics. 2004 Aug 4;20(Suppl 1):i77–i85. doi: 10.1093/bioinformatics/bth912

Table 3.

Frequent patterns corresponding to catalytic residues

S1
 His S1-0 S2-0 CN-2 ASP0-Q2 ACID0-Q2 ALA0-Q1 ALI0-Q1 ALI0-Q5
 Asp S1-0 S2-0 CN-3 ALI1-Q8 ALI0-Q8 ARO0-Q6 NEUTR0-Q3 SER0-Q3 BASIC0-Q7 HIS0-Q7 ALA0-Q8
 Ser S1-0 S2-0 CN-3 ALI0-Q8 NEUTR0-Q7 SER0-Q7 ACID0-Q5 GLY0-Q8 ALI0-Q4 SULFUR0-Q1 GLY0-Q1 CYS0-Q1 ASP0-Q5 ALA0-Q4 ALI0-Q1
S8
 His CN-2 THR0-Q5 GLY0-Q4 HIS0-Q8 BASIC0-Q8 NEUTR0-Q1 NEUTR0-Q2 ALI0-Q4 NEUTR0-Q5
 Asp CN-3 GLY0-Q4 SER0-Q7 LEU0-Q8 GLY0-Q3 VAL0-Q5 ALI0-Q3 NEUTR0-Q7 ALI0-Q4 NEUTR0-Q4 ALI0-Q2 ALI0-Q1 ALI0-Q8 ALI0-Q5
 Ser S1-0 S2-0 LEU0-Q7 SER0-Q7 THR0-Q5 ALA0-Q6 GLY0-Q1 NEUTR0-Q7 ALA0-Q5 ALI0-Q7 NEUTR0-Q5 NEUTR0-Q8 ALI0-Q1 ALI0-Q6 ALI0-Q5
C1
 His CN-3 ALI0-Q4 ALI0-Q8 ALI0-Q1
 Asn CN-2 S1-0 S2-0 TRP0-Q4 ARO0-Q2 SER0-Q8 GLY0-Q1 ARO0-Q4 BASIC0-Q6 ALI0-Q6 NEUTR0-Q8 ALI0-Q1
 Cys CN-3 S1-0 S2-0 ALA0-Q5 HIS0-Q3 PHE0-Q8 TRP0-Q4 BASIC0-Q3 SER0-Q5 GLN0-Q6 ARO0-Q8 ARO0-Q4 NEUTR0-Q5 GLY0-Q2 NEUTR0-Q6 ALI0-Q2 ALI0-Q4 ALI0-Q5

The dynamic features are indicated in boldface.