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. Author manuscript; available in PMC: 2005 Sep 13.
Published in final edited form as: Bioinformatics. 2004 Aug 4;20(Suppl 1):i77–i85. doi: 10.1093/bioinformatics/bth912

Table 4.

Rank of conserved residues in the three familiesa

S1-Chymotrypsin S8-Subtilisin C1-Papain
(A)1gct (B) family (C) 1svn (D) family (E)1huc (F) family
HIS57, 0 SER195,0 ASP32, 0 SER221, 0.14 HIS199, 0 GLN23, 0.17
SER195, 0 ALA55, 0 HIS64, 0 MET222, 0.29 ASN219, 0 CYS29, 0.33
CYS42, 0 HIS57, 0.2 SER221, 0 HIS64, 0.43 GLN23, 0 SER28, 0.33
ALA55, 0 CYS42, 0.2 SER125, 0 SER125, 1.00 SER220, 0 SER220, 0.83
CYS58, 0 CYS58, 0.2 LEU96, 1 PRO225, 1.43 TRP221, 0 GLY27, 1.00
GLY196, 0 GLY196, 0.2 LEU126, 1 ASP32, 2.00 CYS29, 1 HIS199, 1.67
SER214, 1 SER214, 1.4 MET222, 1 ALA223, 2.14 SER28, 2 CYS26, 2.33
ASP102, 2 ASP102, 1.8 PRO225, 2 THR220, 2.57 GLY27, 3 TRP221, 2.5
GLY43, 3 GLY43, 2.2 ALA223, 3 ASN155, 3.29 CYS26, 4 CYS71, 2.83
ILE212, 3 ILE212, 3.0 THR220, 4 LEU126, 4.14 CYS71, 5 PHE32, 3.17
GLY197, 4 GLY197, 3.0 ASN155, 5 PHE189, 4.29 GLY73, 6 ASN219, 3.33
GLY140, 5 GLY140, 4.0 PHE189, 6 HIS226, 4.71 GLY70, 6 GLY73, 3.83
GLY193, 5 GLY193, 4.0 HIS226, 6 LEU96, 4.85 PHE32, 6 GLY70, 3.83
GLY44, 6 GLY44, 4.4 SER190, 7 SER190, 5.14 ILE201, 7 TRP30, 4.00
ALA56, 6 ASP194, 5.0 PRO201, 7 PRO201, 5.71 TRP30, 7 TYR94, 6.00
GLY142, 6 ALA56, 5.0 HIS67, 8 HIS67, 6.71 GLY229, 8 GLY229. 6.17
ASP194, 6 GLY142, 5.0 VAL177, 9 VAL177, 6.71 ILE203, 8 PRO76, 6.67
CYS191, 7 CYS191, 6.0 SER207, 9 SER207, 7.71 LEU216, 8 LEU216, 7.17
TRP141, 8 TRP141, 6.6 ALA228, 9 ALA228, 7.71 PRO76, 8 ALA31, 7.17
CYS182, 8 CYS182, 7.0 THR66, 10 ASP181, 8.29 TYR214, 8 TYR146, 7.17
ALA183, 8 ALA183, 7.0 ASP181, 10 THR66, 8.71 CYS62, 9 ILE201, 7.33
GLY211, 8 GLY211, 7.0 LEU233, 10 LEU233,17.71 ALA34, 9 ILE203, 7.67
ALA31, 9 TYR214, 7.67
SER152, 9 ALA34, 8.17
TYR146, 9 SER152, 8.33
TYR94, 9 CYS62, 8.67
*

Catalytic residues are written in italic and bold face. Numbers are the scores defined in Section 2.5.