Table 2.
Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.
| Strains | Methods | Breakpoints (nt) | Major parent (similarity) | Minor parent (similarity) |
p-Value | |
|---|---|---|---|---|---|---|
| Beginning | Ending | |||||
| GNU-2353 | RDP | 5740 | 6862 | NADC34 (91.1%) |
RespPRRS MLV (93.9%) |
2.365 × 10−31 |
| GENECOVa | 3.710 × 10−02 | |||||
| BootScan | 2.668 × 10−30 | |||||
| MaxChi | 1.649 × 10−12 | |||||
| Chimaeraa | 5.124 × 10−06 | |||||
| SiScan | 7.453 × 10−22 | |||||
| 3Seq | 3.330 × 10−16 | |||||
| LARD | 1.153 × 10−27 | |||||
|
| ||||||
| GNU-2377 | RDP | 470 | 856 | NADC30 (91.4%) |
RespPRRS MLV (97.9%) |
8.359 × 10−17 |
| GENECOVa | 9.330 × 10−06 | |||||
| BootScan | 1.844 × 10−16 | |||||
| MaxChi | 1.586 × 10−07 | |||||
| Chimaera | 1.537 × 10−08 | |||||
| SiScan | 8.470 × 10−12 | |||||
| 3Seq | 1.921 × 10−12 | |||||
| LARD | 2.639 × 10−10 | |||||
aThis method is inapplicable because p-value is higher than 1 × 10−6.