TABLE 4.
Correlation between env V3-V5 genotyping and DEIA genotyping for the African collections
| Genotype by env sequencing | No. of samples with the following env genotype by DEIAa
|
Total (n = 81) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| A | CRF02_AG | BD | C | F | G | Ib | NTc | ||
| A | 13 | 4 | 2 | 19 | |||||
| CRF02_AG | 1 | 26 | 1 | 28 | |||||
| B or D | 11 | 1 | 12 | ||||||
| C | 2 | 1 | 3 | ||||||
| F | 6 | 1 | 7 | ||||||
| G | 10 | 1 | 1 | 12 | |||||
a
Boldface indicates correct identification.
b
I, indeterminate, i.e., similar reactivity with subtype A- and subtype G-specific probes.
c
The NT samples were amplified by nested PCR, but the absorbance value was below the cutoff.