TABLE 3.
GenBank accession numbers for the reference virus sequences included in the phylogenetic analyses presented in Figs. 1 to 3
| Virus | HA gene | NA gene | NP gene | Virus | HA gene | NA gene | NP gene | |
|---|---|---|---|---|---|---|---|---|
| A/Swine/Wisconsin/125/97 (H1N1) | AF222026 | AF222768 | ||||||
| A/Swine/Wisconsin/136/97 (H1N1) | AF222027 | |||||||
| A/Swine/Wisconsin/163/97 (H1N1) | AF222028 | |||||||
| A/Swine/Wisconsin/164/97 (H1N1) | AF222029 | |||||||
| A/Swine/Wisconsin/166/97 (H1N1) | AF222030 | |||||||
| A/Swine/Wisconsin/168/97 (H1N1) | AF222031 | |||||||
| A/Swine/Wisconsin/235/97 (H1N1) | AF222032 | |||||||
| A/Swine/Wisconsin/238/97 (H1N1) | AF222033 | |||||||
| A/Swine/Wisconsin/457/98 (H1N1) | AF222034 | |||||||
| A/Swine/Wisconsin/458/98 (H1N1) | AF222035 | |||||||
| A/Swine/Wisconsin/464/98 (H1N1) | AF222036 | |||||||
| A/Swine/Indiana/1726/88 (H1N1) | M81707 | L46849 | ||||||
| A/Swine/Indiana/9K035/99 (H1N2) | AF250124 | AF205126 | AF250127 | |||||
| A/Swine/Nebraska/1/92 (H1N1) | L09063 | L11164 | ||||||
| A/Swine/Quebec/91 (H1N1) | U03719 | |||||||
| A/Swine/Quebec/81 (H1N1) | I03720 | |||||||
| A/Swine/New Jersey/11/76 (H1N1) | K00992 | |||||||
| A/Swine/Ehime/1/80 (H1N2) | X57494 | D00713 | ||||||
| A/Swine/England/283902/93 (H1N1) | U72668 | |||||||
| A/Taiwan/1/86 (H1N1) | D00407 | |||||||
| A/Bayern/7/95 (H1N1) | —a | |||||||
| A/USSR/90/77 (H1N1) | K01330 | |||||||
| A/Duck/Hong Kong/196/77 (H1) | D00839 | |||||||
| A/Swine/England/195852/92 (H1N1) | U72667 | L40332 | ||||||
| A/Swine/Germany/8533/91 (H1N1) | Z46434 | |||||||
| A/Swine/Germany/2/81 (H1N1) | Z30276 | M22579 | ||||||
| A/Duck/Alberta/35/76 (H1N1) | D10477 | |||||||
| A/Duck/Wisconsin/1938/80 (H1N1) | L25071 | |||||||
| A/Wuhan/359/95 (H3N2) | AF008722 | U51246 | ||||||
| A/Swine/Nebraska/209/98 (H3N2) | AF251404 | AF251407 | ||||||
| A/Swine/Iowa/533/99 (H3N2) | AF251412 | AF251415 | ||||||
| A/Swine/Iowa/569/99 (H3N2) | AF251420 | AF251423 | ||||||
| A/Swine/Minnesota/593/99 (H3N2) | AF251428 | AF251431 | ||||||
| A/Swine/Iowa/8548-1/98 (H3N2) | AF153239 | AF153255 | ||||||
| A/Swine/Minnesota/9088-2/98 (H3N2) | AF153238 | AF153254 | ||||||
| A/Swine/Texas/4199-2/98 (H3N2) | AF153237 | AF153253 | ||||||
| A/Swine/Ontario/41848/97 (H3N2) | AF251396 | AF251399 | ||||||
| A/Swine/North Carolina/35922/98 (H3N2) | AF153236 | AF153252 | ||||||
| A/Idaho/4/95 (H3N2) | U51247 | |||||||
| A/Johannesburg/33/94 (H3N2) | U43425 | |||||||
| A/Bangkok/1/79 (H3N2) | K01150 | |||||||
| A/Udorn/72 (H3N2) | J02168 | |||||||
| A/Swine/Colorado/1/77 (H3N2) | AF251389 | AF251392 | ||||||
| A/Swine/Hong Kong/3/76 (H3N2) | D00715 | |||||||
| A/Swine/Hong Kong/13/77 (H3N2) | D21190 | |||||||
| A/Swine/Nagasaki/1/90 (H1N2) | D29659 | |||||||
| A/Swine/Nagasaki/1/89 (H1N2) | D29658 | |||||||
| A/Chicken/Pennsylvania/8125/83 (H5N2) | M11925 | |||||||
| A/Quail/Hong Kong/AF157/93 (H9N2) | AF156399 | |||||||
| A/Chicken/Beijing/1/94 (H9N2) | AF156398 | |||||||
| A/Duck/Hong Kong/Y280/97 (H9N2) | AF156394 | |||||||
| A/Chicken/Hong Kong/G23/97 (H9N2) | AF156392 | |||||||
| A/Hokkaido/2/92 (H1N1) | AF250126 | |||||||
| A/Swine/Wisconsin/1915/88 (H1N1) | M76608 | |||||||
| A/Swine/Iowa/17672/88 (H1N1) | M63768 | |||||||
| A/Swine/Tennessee/24/77 (H1N1) | M30748 | |||||||
| A/Swine/Ontario/2/81 (H1N1) | M63767 | |||||||
| A/Swine/Wisconsin/1/67 (H1N1) | M76607 | |||||||
| A/Hong Kong/5/83 (H3N2) | M22577 | |||||||
| A/Memphis/8/88 (H3N2) | L07370 | |||||||
| A/Beijing/337/89 (H3N2) | L07374 | |||||||
| A/Shanghai/6/90 (H3N2) | L07357 | |||||||
| A/Akita/1/94 (H3N2) | U71144 | |||||||
| A/Akita/1/95 (H3N2) | U71145 | |||||||
| A/Memphis/6/90 (H3N2) | L07356 | |||||||
| A/Udorn/307/72 (H3N2) | M14922 | |||||||
| A/Singapore/1/57 (H2N2) | M63752 | |||||||
| A/Ohio/4/83 (H1N1) | M59334 | |||||||
| A/Swine/Italy/839/89 (H1N1) | M63772 | |||||||
| A/Duck/Bavaria/2/77 (H1N1) | M22574 | |||||||
| A/Mallard/Astrakhan/244/82 (H14N6) | M30764 | |||||||
| A/Swine/Hong Kong/126/82 (H3N2) | M63771 | |||||||
| A/Duck/Australia/749/80 (H1N1) | M63783 | |||||||
| A/Turkey/England/647/77 (H1N1) | M76603 | |||||||
| A/Equine/Prague/1/56 (H7N7) | M63748 | |||||||
| B/Lee/40 | K01395 |
a
Sequence kindly provided by the Influenza Virus Branch of the Centers for Disease Control and Prevention.