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. Author manuscript; available in PMC: 2025 Apr 27.
Published in final edited form as: Nat Protoc. 2023 May 29;18(7):2051–2083. doi: 10.1038/s41596-023-00829-4
fori=1:imNumHs=exp(-1j∗2∗pi.∗(FX0.∗locX(i)∕imSize0+FY0.∗locY(i)∕imSize0));%generate the phase factorimRefRefineSum=imRefRefineSum+ifft2(fft2(imRawCrop(:,:,i).∗Hs);%sup-pixel level shiftendimRefRefine=imRefRefineSum∕imNum;%imRefRefine: the refined reference image