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. 2025 Apr 28;17:23. doi: 10.1186/s11689-025-09613-9

Table 2.

Experiment-wide Enrichment Results for Salience-Visual Functional Connectivity

All Subjects Excluding n = 8 sleeping subjects
ORA Max-Mean GSEA ORA Max-Mean GSEA
SA 27.9% 1.30 0.57 26.6% 1.29 0.56
p-value 0.00016* 0.00051* 0.00056* 0.00022* 0.00058* 0.000840
RRB 25.0% 1.33 0.56 20.0% 1.26 0.53
p-value 0.00022* 0.00037* 0.00072 0.0015 0.000947 0.002520
SA, RRB jointly 27.2% N/A 0.65 27.2% N/A 0.63
p-value 0.00001* 0.00020* 0.0001* 0.000360*

Observed values for the ORA (5% threshold), max-mean and GSEA enrichment statistics with p-values in italics: raw permutation p-value are presented, those which meet our p ~ 0.0005 threshold for significance are marked with an asterisk (*). Results are given for the entire sample and excluding sleeping subjects (n = 8). The p-values were determined using independent permutation runs: 25 K permutations for the more compute-intensive GSEA, and 250 K for ORA and max-mean each. Two-sided t-statistics were used to screen for association with SA or RRB individually. Partial F tests were used to screening for association with SA and RRB jointly (d.f. = 2, 85 for the complete sample and d.f. = 2, 77 when excluding sleeping subjects). The expectation for ORA is 5% under the null. Max-Mean is a directional test and cannot be used with F screening statistics. The median max-mean value under the null hypothesis of no enrichment is ~ 0.54 with 0.1% and 99.9% quantile estimates of 0.31 and 1.25 (obtained in separate analyses). The median GSA value under the null is ~ 0.21 (with 0.1% and 99.9% quantiles: 0.17 and 0.60) for the F test and ~ 0.20 (0.18–0.54) for t-tests (separate analysis as well)