Table 2.
Root transcriptome sample sequencing data evaluation statistics.
| Samples | Avg Raw reads | Avg Clean reads | Avg Raw base (G) | Avg Clean base (G) | Avg Q30 (%) | Avg GC content (%) |
|---|---|---|---|---|---|---|
| Pal-Y | 21,828,826 | 20,591,855 | 6.55 | 6.18 | 94.09 | 44.48 |
| Pto-M | 20,970,482 | 19,730,100 | 6.29 | 5.92 | 93.87 | 44.16 |
| 84 K | 21,544,804 | 20,555,604 | 6.46 | 6.17 | 94.03 | 44.29 |
| LM50 | 21,570,825 | 20,211,423 | 6.47 | 6.06 | 94.16 | 44.58 |
| 107 | 20,767,490 | 19,881,300 | 6.23 | 5.97 | 94.08 | 43.84 |
| H3-1 | 21,216,991 | 20,161,914 | 6.37 | 6.05 | 94.01 | 43.89 |
| Psz-Z | 21,417,965 | 20,309,521 | 6.43 | 6.09 | 94.18 | 43.86 |
| Pot-M | 21,134,376 | 19,818,891 | 6.34 | 5.95 | 94.12 | 44.01 |
| Peu-H | 21,473,908 | 20,676,342 | 6.44 | 6.20 | 94.09 | 43.86 |
Raw reads: The number of Raw reads obtained from sequencing; Clean reads: Number of Clean reads obtained after filtration; Raw bases: The total number of bases of the Raw data, in G; Clean bases: The total number of bases of the filtered data, in G; Q30 (%): The percentage of bases with Phred values greater than 30 in the total; GC content (%): The percentage of G/C bases in the total number of bases. Avg: The average of the biological replicates (n = 3) for each sample.