Reagents and tools table
| Reagent/Resource | Reference or Source | Identifier or Catalog Number |
|---|---|---|
| Experimental models | ||
| Rice stripe virus Jiangsu isolate (JSHA) | Zhao et al, 2018 | N/A |
| SBPH populations | This paper | N/A |
| O. sativa subsp. japonica wuyujing3 | This paper | N/A |
| O. sativa subsp. japonica cv. Nipponbare Wild-type | This paper | N/A |
| O. sativa subsp. japonica cv. Nipponbare OE263a | This paper | N/A |
| O. sativa subsp. japonica cv. Nipponbare GATA19KO | This paper | N/A |
| Rice protoplasts | This paper | N/A |
| Nicotiana benthamiana | This paper | N/A |
| GV3101 Agrobacterium Competent Cells | Zoman | Cat# ZK295 |
| Drosophila S2 cells | Thermo Scientific | Cat# R69007 |
| Recombinant DNA | ||
| psiCHECK2 | Promega | Cat# C8021 |
| pciCHECK2-CathBL-5′UTR | This paper | N/A |
| pciCHECK2-SPS5-5′UTR | This paper | N/A |
| pciCHECK2-NTFYbL-3′UTR | This paper | N/A |
| pAC5.1B | Invitrogen | Cat# V411020 |
| pAC5.1B-CathBL | This paper | N/A |
| pBI221 | MiaoLing | Cat# P6700 |
| pBI221-EGFP | HonorGene | Cat# VZC0336 |
| pBI221-EGFP-targe | This paper | N/A |
| pBI-OE263a | This paper | N/A |
| pBI-Ex-In-Ex | This paper | N/A |
| pBI-Ex-InMT-Ex | This paper | N/A |
| Antibodies | ||
| Anti-GATA19 polyclonal antibody | This paper | N/A |
| Anti-RSV NP monoclonal antibody | Zhao et al, 2016b | N/A |
| Anti-Ago1 monoclonal antibody | Zhao et al, 2019a | N/A |
| Anti-GAPDH polyclonal antibody | Wang et al, 2013 | N/A |
| Anti-Histone H3 Mouse Monoclonal Antibody | EASYBIO | Cat# BE3021 |
| Anti-plant-Actin Mouse Monoclonal Antibody | EASYBIO | Cat# BE0028 |
| Anti-V5-Tag Mouse Monoclonal Antibody | EASYBIO | Cat# BE2032 |
| Anti-His-Tag Mouse Monoclonal Antibody | EASYBIO | Cat# BE2019 |
| Goat Anti-Mouse IgG (H&L)-HRP | EASYBIO | Cat# BE0102 |
| Goat Anti-Rabbit IgG (H&L)-HRP | EASYBIO | Cat# BE0101 |
| Goat anti-Mouse IgG (Fc specific, Heavy Chain), HRP | EASYBIO | Cat# BE0104 |
| Goat anti-Rabbit IgG (Fc specific, Heavy Chain), HRP | EASYBIO | Cat# BE0106 |
| Ago1/Anti-Argonaute 1 Antibody | PhytoAB | Cat# PHY1381S |
| Ago4/ Anti-Argonaute 4 Antibody | PhytoAB | Cat# PHY0202S |
| Recombinant Anti-DDDDK tag (Binds to FLAG® tag sequence) antibody | Abcam | Cat# ab205606 |
| Goat Anti-Mouse IgG H&L | Abcam | Cat# ab6708 |
| Streptavidin, HRP labeled | Biodragon | Cat# BF06185X |
| Alexa Fluor 488 conjugated secondary antibody | Invitrogen | Cat# A-11008 |
| Oligonucleotides and other sequence-based reagents | ||
| Primers and probes | This paper | Appendix Table S1 |
| Chemicals, Enzymes and other reagents | ||
| Caspase inhibitor Z-VAD-FMK | Beyotime | Cat# C1202-0.02ml |
| CA-074 methyl ester | ChemeGen | Cat# 147859-80-1 |
| Chloroform | Sigma-Aldrich | Cat# C2432-500M |
| Dimethyl sulfoxide (DMSO) | Sigma-Aldrich | Cat# D2650 |
| Protease Inhibitor Cocktail | MilliporeSigma | Cat# P8849 |
| M-MLV Reverse Transcriptase | Promega | Cat# PAM1701 |
| Oligo(dT)15 Primer | Promega | Cat# PAC1101 |
| Random Pimers | Promega | Cat# PAC1181 |
| Ampicillin | Sangon | Cat# B541011 |
| BrightStar™-Plus Positively Charged Nylon Membrane | Invitrogen | Cat# AM10102 |
| Glycogen (5 mg mL−1) | Invitrogen | Cat# AM9510 |
| Lipofectamine™ 3000 Transfection Reagent | Invitrogen | Cat# 11668019 |
| North2SouthTM Hybridization Stringency Wash Buffer (2×) | Thermo Scientific | Cat# 37555 |
| Nucleic Acid Detection Blocking Buffer | Thermo Scientific | Cat# 89880A |
| Substrate Equilibration Buffer | Thermo Scientific | Cat# 89880C |
| TRIzol™ Reagent | Invitrogen | Cat# 15596026 |
| UltraPure™ DNase/RNase-Free Distilled Water | Invitrogen | Cat# 10977015 |
| UltraPure™ SSC, 20X | Invitrogen | Cat# 15557036 |
| 2×RNA Loading Dye | NEB | Cat# B0363S |
| T4 DNA Ligase | NEB | Cat# M0202S |
| T4 ligase reaction buffer | NEB | Cat# B0216S |
| dNTPs (2.5 mM each) | Tiangen | Cat# CD117-02 |
| 10×TBE buffer | Solarbio | Cat# T1051 |
| Acid phenol chloroform | Merck | Cat# 77619 |
| Sodium periodate, AR, 99.5% | Macklin | Cat# S817518 |
| Borate Buffer | Macklin | Cat# B885515 |
| Super Hybridization Solution | Zeyebio | Cat# ZY7352PD |
| Nucleic Acid Pre-Hybridization Solution | Zeyebio | Cat# ZY601922B |
| FDA (10 mg ml−1) | Coolaber | Cat# PPT5351 |
| 4% Paraformaldehyde Fix Solution (PFA) | BBI Life Science | Cat# E672002-0100 |
| VAD-FMK | Abcam | Cat# ab270770 |
| Caspase 3 Activity Assay Kit | Beyotime | Cat# C1116 |
| Caspase 8 Activity Assay Kit | Beyotime | Cat# C1152 |
| One-Step TUNEL Apoptosis Assay Kit (Red Fluorescence) | Beyotime | Cat# C1089 |
| Cathepsin B Assay Kit (Magic Red) | Abcam | Cat# Ab270772 |
| Dual-Glo® Luciferase Assay System | Promega | Cat# E2920 |
| Dynabeads Protein G | Invitrogen | Cat# 10003D |
| T7 RiboMAX™ Express RNAi System | Promega | Cat# P1700 |
| KOD-Plus-Mutagenesis Kit | Toyobo | Cat# SMK-101 |
| miRcute Plus miRNA First-Strand cDNA Kit | Tiangen | Cat# 4992909 |
| miRcute Plus miRNA qPCR Kit (SYBR Green) | Tiangen | Cat# 4992779 |
| Premium One Cell-Free Protein Expression Kit | Tiangen | Cat# CFS-EDX-ONE |
| In-Fusion HD Cloning kit | Takara | Cat# 638943 |
| FirstChoice™ RLM-RACE | Invitrogen | Cat# AM1700M |
| pEASY®-Blunt Zero Cloning Kit | TRANS | Cat# CB501-01 |
| Plant nucleus and cytoplasm extraction kit | Bestbio | Cat# BB-31124 |
| Rice Protoplast Preparation and Transformation Kit | Coolaber | Cat# PPT111-5T |
| SuperSignal West Femto | Thermo Scientific | Cat# 34094 |
| Superscript III First-Strand Synthesis System | Thermo Scientific | Cat# 18080051 |
| Magna RIP RNA-binding protein immunoprecipitation kit | Merck | Cat# 17-700 |
| Software | ||
| GraphPad Prism 9.0 | https://www.graphpad.com/ | N/A |
| SPSS statistics 19.0 | https://spss.software.informer.com/download/ | N/A |
| ImageJ | https://imagej.net/ij/ | N/A |
| LightCycler480 | https://lightcycler-961.software.informer.com/download/ | N/A |
| miRanda | http://www.microrna.org/microrna | N/A |
| RNAhybrid | https://bibiserv.cebitec.un-ibielefeld.de/rnahybrid | N/A |
| psRNATarget | http://plantgrn.noble.org/psRNATarget/ | N/A |
| Other | ||
| RNA-seq reads (Full-length transcriptome of SBPH) | Tong et al, 2022 | PRJCA005421 |
| RNA-seq reads (Gut transcriptom of SBPH) | Zhao et al, 2016a | SRP048969 |
| Oryza sativa (rice) genomic DNA data | http://rice.uga.edu/analyses_search_blast.shtml | N/A |