Table 3.
Key genes for DBP degradation in P. megaterium P-7 based on KEGG and Swiss-Prot annotation.
| Gene ID | KO ID | Gene name | Function description (KEGG/Swiss-Prot) |
|---|---|---|---|
| Esterases/hydrolases | |||
| gene0529 | K01066 | aes | Acetyl esterase [EC:3.1.1.-] |
| gene1165 | K01175 | ybfF | Esterase [EC:3.1.-.-] |
| gene4373/ gene4638 | K03928 | yvaK | Carboxylesterase [EC:3.1.1.1] |
| gene4831 | K03930 | estA | Putative tributyrin esterase [EC:3.1.1.-] |
| gene3461 | K01617 | dmpH | 2-hydroxyhexa-2,4-dienoate hydratase |
| Decarboxylases | |||
| gene0156 | K21759 | bsdD | Vanillate/4-hydroxybenzoate decarboxylase subunit D |
| gene0457/gene1920 | K01586 | lysA | Diaminopimelate decarboxylase [EC:4.1.1.20] |
| gene1069/gene3430/gene3448/gene4613 | K01607 | pcaC | 4-carboxymuconolactone decarboxylase |
| gene3189 | K13932 | mdcD | Malonate decarboxylase beta subunit [EC:4.1.1.87] |
| gene3190 | K13931 | mdcC | Malonate decarboxylase delta subunit |
| gene3192 | K13929 | mdcA | Malonate decarboxylase alpha subunit [EC:2.3.1.187] |
| gene3193 | K13935 | mdcH | Malonate decarboxylase epsilon subunit [EC:2.3.1.39] |
| gene4994 | K13727 | pdc | Phenolic acid decarboxylase [EC:4.1.1.-] |
| gene0155 | K01612 | bsdC | UbiD family decarboxylase, phenolic acid decarboxylase |
| Dioxygenases | |||
| gene1517 | K07104 | catE | Catechol 2,3-dioxygenase [EC:1.13.11.2] |
| gene2754 | K08967 | mtnD | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase |
| gene3454 | K00452 | – | 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] |
| gene3464 | K00453 | kynA | Tryptophan 2,3-dioxygenase [EC:1.13.11.11] |
| gene0497/gene3652/gene5204 | K15975 | – | Ring-cleaving dioxygenase |
| gene1285/gene1474 | – | – | Aromatic ring-hydroxylating dioxygenase subunit |