TABLE 1.
SIVsmm strains of known geographic origin
| SIVsmm strain | Status | Yra | Ageb | Sexc | Countryd | Locale | Diagnosisf | Sequenceg | Surveyh | Virus isolation | No. of infected animals/no. tested (%)h | Reference or source |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SL92b | wild born | 1992 | Juvenile | M | Sierra Leone | Panguma | Plasma Ab | FL | Household pet | Yes | 2/66 (3) | 10, 13 |
| SL92c | wild born | 1992 | Juvenile | M | Sierra Leone | Panguma | Plasma Ab | P (gag, env) | Household pet | No | 2/66 (3) | 13 |
| SL92a | wild living | 1992 | Adult | M | Sierra Leone | Gombu | Plasma Ab | P (gag, env) | Trapped SM | Yes | 4/10 (40) | 13 |
| SL92d | wild living | 1992 | Adult | F | Sierra Leone | Gombu | Plasma Ab | P (gag, env) | Trapped SM | No | 4/10 (40) | 13 |
| SL92e | wild living | 1992 | Adult | F | Sierra Leone | Gombu | Plasma Ab | P (gag, env) | Trapped SM | No | 4/10 (40) | 13 |
| SL92f | wild living | 1992 | Adult | F | Sierra Leone | Gombu | Plasma Ab | P (gag, env) | Trapped SM | No | 4/10 (40) | 13 |
| SL93-080 | wild born | 1992 | Juvenile | M | Sierra Leone | Gombu | Spleen DNA | P (gag, pol, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-057 | wild born | 1992 | Adult | F | Sierra Leone | Bombowo | Spleen DNA | P (gag, pol, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-063 | wild born | 1992 | Adult | M | Sierra Leone | Bombowo | Spleen DNA | P (gag, pol, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-119 | wild born | 1993 | Adult | M | Sierra Leone | Bombowo | Spleen DNA | P (gag, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-134 | wild born | 1993 | Adult | M | Sierra Leone | Bombowo | Spleen DNA | P (gag, pol, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-135 | wild born | 1993 | Juvenile | M | Sierra Leone | Bombowo | Spleen DNA | P (gag, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93-139 | wild born | 1993 | Juvenile | F | Sierra Leone | Bombowo | Spleen DNA | P (pol, env) | Bushmeat market | No | 7/12 (58) | 2 |
| SL93g | wild living | 1993 | NA | NA | Sierra Leone | Mafuri | Fecal vRNA | P (env) | Nonhabituated SMi | No | 1/61 (2)j | 45 |
| LIB1 | wild born | 1989 | Juvenile | F | Liberia | Robertsfield | Plasma Ab | P (gag, pol, env) | Household pet | Yes | 2/25 (8) | 13, 47 |
| CI2 | wild born | 1979 | Juvenile | NA | Côte d'Ivoire | NAe | Plasma Ab | P (gag, env) | Captive SM (Abidjan Zoo) | Yes | 3/6 (50) | 50; this study |
| CI8 | wild born | 1981 | Juvenile | NA | Côte d'Ivoire | NAe | Plasma Ab | P (gag, env) | Captive SM (Abidjan Zoo) | Yes | 3/6 (50) | 50; this study |
| Taï1 | wild living | 2002 | Juvenile | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59)k | This study |
| Taï13 | wild living | 2002 | Adult | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï17 | wild living | 2002 | Juvenile | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï22 | wild living | 2002 | Adult | M | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï23 | wild living | 2002 | Adult | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï29 | wild living | 2002 | Adult | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï31 | wild living | 2002 | Adult | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï32 | wild living | 2002 | Adult | F | Cote d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï33 | wild living | 2002 | Adult | M | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï35 | wild living | 2002 | Adult | M | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag, env) | Habituated SM | No | 11/35 (59) | This study |
| Taï37 | wild living | 2002 | Adult | F | Côte d'Ivoire | Taï Forest | Fecal vRNA | P (gag) | Habituated SM | No | 11/35 (59) | This study |
Year of analysis of captive sooty mangabeys and year of SIVsmm detection in wild-living sooty mangabeys.
Estimated age at the time of analysis. Adult, >6 years; juvenile, 2 to 5 years; NA, not available.
M, male; F, female; NA, not available.
Country of capture or home range of wild sooty mangabeys.
CI2 and CI8 were captured in western Côte d'Ivoire close to the Liberian border (exact location is unknown).
Test performed to diagnose SIVsmm infection. Ab, antibody.
SIVsmm sequence information available. FL, full-length sequence; P, partial sequence.
Sooty mangabey population surveyed. SM, sooty mangabey.
Number of infected sooty mangabeys per total number screened in study in which the infected sooty mangabey was identified.
Fecal samples were not preserved in RNAlater, and their species origin was not genetically confirmed.
Prevalence was calculated for the entire habituated community (n = 120).