Table 2.
Genome characteristics of Clostridium perfringens CP280.
| Constituent | Topology | Size (bp) | GC (%) | CDSsa | rRNA | tRNA | CRISPRsb | Genes specially mentioned in this study | Accession number | |
|---|---|---|---|---|---|---|---|---|---|---|
| Chromosome | Circular | 3,445,394 | 28.4 | 3,135 | 30 | 96 | 0 | plc/cpa, pfoA, nanH, nanI, nanJ, nanK, nagH, nagI, nagJ, nagK, colA, ccp/cloSI | AP028647 | |
| Plasmid | pCP280-82k | Circular | 82,749 | 25.7 | 80 | 0 | 0 | 0 | netB | AP028648 |
| Plasmid | pCP280-76k | Circular | 76,703 | 26.1 | 81 | 0 | 0 | 0 | cpb2 | AP028649 |
| Plasmid | pCP280-55k | Circular | 55,009 | 26.6 | 64 | 0 | 0 | 0 | cpe, cpb2 | AP028650 |
| Plasmid | pCP280-38k | Circular | 38,923 | 26.4 | 48 | 0 | 0 | 0 | None | AP028651 |
| Plasmid | pCP280-4k | Circular | 4,145 | 22.9 | 5 | 0 | 0 | 0 | None | AP028652 |
| Plasmid | pCP280-3k | Circular | 3,200 | 23.2 | 3 | 0 | 0 | 0 | None | AP028653 |
| Total | NAc | 3,706,123 | 28.2 | 3,416 | 30 | 96 | 0 | NAc | NAc | |
aCDSs, coding sequences. bCRISPRs, Clustered regularly interspaced short palindromic repeats. cNA, not applicable.