Table 1.
Oligonucleotides used in this study
| Name | Sequence (5′–3′) | LNA (%) | Calculated Tm (°C) |
|---|---|---|---|
| GAA12 | G∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A | 40 | 40 |
| GAA15 | G∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A | 40 | 50 |
| GAA15DNAEnd | G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a | 33 | 45 |
| GAA15LNAEnd | G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗A | 40 | 48 |
| GAA16Low | G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G | 38 | 51 |
| GAA16High | G∗A∗a∗G∗A∗a∗G∗A∗a∗G∗A∗a∗G∗A∗a∗G | 69 | 66 |
| GAA18 | G∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A | 39 | 58 |
| GAA19Low | G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G∗a∗a∗G | 37 | 59 |
| GAA19High | G∗A∗a∗G∗A∗a∗G∗A∗a∗G∗A∗a∗G∗A∗a∗G∗A∗a∗G | 68 | 79 |
| GAA24 | G∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A∗g∗a∗A | 38 | 76 |
| CTT15 | C∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T | 40 | 44 |
| CTT15DNAEnd | C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t | 33 | 41 |
| CTT15LNAEnd | C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗T | 40 | 44 |
| CTT16Low | C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C | 38 | 47 |
| CTT16High | C∗T∗t∗C∗T∗t∗C∗T∗t∗C∗T∗t∗C∗T∗t∗C | 69 | 62 |
| CTT19Low | C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C∗t∗t∗C | 37 | 62 |
| CTT19High | C∗T∗t∗C∗T∗t∗C∗T∗t∗C∗T∗t∗C∗T∗t∗C∗T∗t∗C | 68 | 80 |
| CTT24 | C∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T∗c∗t∗T | 38 | 68 |
| IRL15(1) | G∗a∗G∗t∗g∗G∗a∗t∗A∗t∗a∗G∗a∗g∗G | 40 | 48 |
| IRL15(2) | C∗t∗C∗a∗t∗C∗a∗c∗C∗t∗a∗C∗a∗t∗A | 40 | 46 |
| Scrambled19 | g∗A∗c∗G∗A∗c∗G∗A∗c∗G∗A∗c∗G∗A∗c∗G∗A∗c∗G | 63 | 82 |
| IRL24 | C∗t∗C∗a∗t∗C∗a∗c∗C∗t∗a∗C∗a∗t∗A∗c∗a∗T∗a∗c∗T∗c∗t∗A | 38 | 68 |
| IRL24(2) | C∗T∗c∗A∗T∗c∗A∗C∗t∗T∗T∗c∗T∗T∗a∗T∗T∗t∗A∗C∗c∗C∗t∗C | 67 | 91 |
Chemical modifications are marked as follows: Uppercase: LNA, lowercase: DNA, and ∗: phosphorothioate backbone.