| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Rabbit anti-AIF polyclonal antibody | R&D Systems | Cat# AF1457, RRID: AB_2224516 |
| Mouse anti-cytochrome-c monoclonal antibody | BD Biosciences | Cat# 556432, RRID: AB_396416 |
| Mouse anti-GAPDH monoclonal antibody (clone 6C5) | Millipore | Cat# MAB374 RRID: AB_2107445 |
| Rabbit anti-GAPDH polyclonal antibody | Yamaji et al. 2003, https://www.sciencedirect.com/science/article/pii/S016748890200397X?via%3Dihub | N/A |
| Mouse anti-glial fibrillary acidic protein (GFAP) monoclonal antibody (Clone 6F2) | Agilent Technologies (DAKO) | Cat# M0761 RRID: AB_2109952 |
| Rabbit anti-H2B polyclonal antibody | Sigma-Aldrich (Upstate) | Cat# SAB4503276 RRID: AB_10747200 |
| Rabbit anti-MAP2 rabbit polyclonal antibody | Millipore | Cat# AB5622 RRID: AB_91939 |
| Rabbit anti-myc polyclonal antibody (A-14) | Santa Cruz Biotechnology | Cat# sc-789 RRID: AB_631274 |
| Rabbit anti-myc monoclonal antibody (Clone 9E10) | Santa Cruz Biotechnology | Cat# sc-40 RRID: AB_627268 |
| Mouse anti-NeuN monoclonal antibody (Clone A60) | Millipore | Cat# MAB377 RRID: AB_2298772 |
| Rabbit anti-TPI polyclonal antibody | Yamaji et al. 2003, https://www.sciencedirect.com/science/article/pii/S016748890200397X?via%3Dihub | N/A |
| Mouse anti-CIV (OxPhos Complex IV) monoclonal antibody (Clone 1D6E1A8) | Invitrogen | Cat# 459600 N/A |
| Secondary (western blotting): goat anti-mouse IgG (H + L), HRP-conjugated | BIO-RAD | Cat #172-1011 RRID: AB_11125936 |
| Secondary (western blotting): goat anti-rabbit IgG (H + L), HRP-conjugated | BIO-RAD | Cat #172-1019 RRID: AB_11125143 |
| Secondary (immunohistochemistry): donkey anti-mouse IgG, Alexa-Fluor 488 | Thermo Fisher Scientific (Invitrogen) | Cat # A32723 RRID: AB_2633275 |
| Secondary (immunohistochemistry): donkey anti-mouse IgG, Alexa-Fluor 568 | Thermo Fisher Scientific (Invitrogen) | Cat# A10037 RRID: AB_11180865 |
| Secondary (immunohistochemistry): donkey anti-rabbit IgG, Alexa-Fluor 488 | Thermo Fisher Scientific (Invitrogen) | Cat# A32790 RRID: AB_2762833 |
| Secondary (immunohistochemistry): donkey anti-rabbit IgG, Alexa-Fluor 568 | Thermo Fisher Scientific (Invitrogen) | Cat# A10042 RRID: AB_2534017 |
| Bacterial and virus strains | ||
| W3CG (K5 strain) | Ganter et al. 1990, https://doi.org/10.1021/bi00492a013 | N/A |
| pTRE2 | Clontech (TAKARA) | https://www.addgene.org/vector-database/4412/ Cat#6241-1 |
| pTRE2-GAPDH-C152A | Present study | N/A |
| pAAV-FtTA | Hikida et al. 2010, https://doi.org/10.1016/j.neuron.2010.05.011 | N/A |
| pAAV-MCS | Agilent Technologies | Cat #240071 |
| pAAV-RS | Agilent Technologies | Cat #240071 |
| pHelper | Agilent Technologies | Cat #240071 |
| tTA-AAV2 | Hikida et al. 2010, https://doi.org/10.1016/j.neuron.2010.05.011 | N/A |
| pBAD-HisA | Thermo Fisher Scientific (Invitrogen) | Cat # V430-01 |
| pBAD-HisA-human GAPDH | Nakajima et al. 2009, https://doi.org/10.1074/jbc.M109.027698 | N/A |
| pBAD-HisA-mouse GAPDH | Nakajima et al. 2015, https://doi.org/10.1074/jbc.M114.635607 | N/A |
| pBAD-HisA-human C152A-GAPDH | Nakajima et al. 2009, https://doi.org/10.1074/jbc.M109.027698 | N/A |
| Chemicals, peptides, and recombinant proteins | ||
| Doxycycline (Dox) | Sigma-Aldrich | Cat # D3447 |
| 2,3,5-Triphenyl tetrazolium chloride (TTC) | Sigma-Aldrich | Cat # T8877 |
| 4′,6-Diamidino-2-phenylindole dihydrochloride (DAPI) | DOJINDO | Cat # D523 |
| Protease inhibitor cocktail | Thermo Fisher Scientific (Roche) | Cat # 11836145001 |
| Blocking One | Nakalai Tesque | Cat # 03953-95 |
| Isoflurane | DS Pharm | Cat # 59272 |
| Paraformaldehyde | MERK-Sigma-Aldrich | Cat # 158127 |
| NOR3 | DOJINDO | Cat # N390 |
| Fluorescence Mounting Medium | Agilent Technologies (Dako) | Cat # S3023 |
| Deprenyl | Fujimoto Pharmaceutical Co. Ltd. | N/A |
| Experimental models: Organisms/strains | ||
| Mouse (M. musculus), C57BL/6J | Jackson Laboratory | JAX: 000664 RRID:IMSR_JAX:000664 |
| C57BL/6J C152A-Tg mice | Present study | N/A |
| C57BL/6J C152A-Tg strain 2 mice | Present study | N/A |
| Oligonucleotides | ||
| C152A (mutagenesis) sense 5′-ATCAGCAATGCCTCCGCCACCACCAAC-3′ | Present study | N/A |
| C152A (mutagenesis) antisense 5′-GTTGGTGGTGGCGGAGGCATTGCTGAT-3′ | Present study | N/A |
| pBAD-HisA sequencing primer (forward) 5′- ATGCCATAGCATTTTTATCC -3′ |
Thermo Fisher Scientific (Invitrogen) | Cat #V430-01 |
| pBAD-HisA sequencing primer (reverse) 5′- GATTTAATCTGTATCAGG -3′ |
Thermo Fisher Scientific (Invitrogen) | Cat #V430-01 |
| pTRE2 sequencing primer (forward) 5′-GACCTCCATAGAAGACACCG-3′ |
Clontech (TAKARA) | Cat# 6241-1 |
| pTRE2 sequencing primer (reverse) 5′-TACAAGGGACATCTTCCCATTC-3′ |
Clontech (TAKARA) | Cat# 6241-1 |
| Primer-A forward (genotyping) 5′-GGTACCCGGGTCGAGGTAGGCGTGT-3′ |
Present study | N/A |
| Primer-A reverse (genotyping) 5′-GAATTCGGGGCCGCGGAGGCT-3′ |
Present study | N/A |
| Primer-B forward (genotyping) 5′-CCGTCAGATCGCCTGGAGACGCCAT-3′ |
Present study | N/A |
| Primer-B reverse (genotyping) 5′-TGGTGACCAGGCGCCCAATACGACC-3′ |
Present study | N/A |
| Recombinant DNA | ||
| pTRE2-C152A-GAPDH-myc | Present study | N/A |
| Cells | ||
| PC12 | ATCC | Cat# CRL-1721 RRID:CVCL_0481 |
| Deposited data | ||
| Mendeley data | Present study | https://doi.org/10.17632/r63n4pk94p.3 |
| Critical commercial assays | ||
| QuickChange Site-Directed Mutagenesis Kit | Agilent (Stratagene) | Cat # 200518 |
| QIAquick Gel Extraction Kit | Qiagen | Cat # 28706 |
| Lipofectamine 2000 Transfection Reagent | Thermo Fisher Scientific (Invitrogen) | Cat # 11668019 |
| VIRA TRAP AAV Purification Kit | Omega Bio-Tek | Cat #V1169-00 |
| AAV2 Titration ELISA Kit | Progen | Cat # PRATV |
| Pierce™ BCA Protein Assay Kits | Thermo Fisher Scientific (Pierce) | Cat # 23225 |
| Pierce™ ECL Plus Western Blotting Substrate | Thermo Fisher Scientific (Pierce) | Cat # 32132 |
| CellTiter-Glo® Luminescent Cell Viability Assay | Promega | Cat #G7573 |
| Software and algorithms | ||
| AutoDock Vina | The Scripps Research Institute |
https://vina.scripps.edu RRID:SCR_011958 |
| Ligplot+ | European Bioinformatics Institute | https://www.ebi.ac.uk/thornton-srv/software/LigPlus/RRID:SCR_018249 |
| Pymol 3.0 | Schrödinger |
https://pymol.org RRID:SCR_000305 |
| GraphPad Prism 10.2.2 | GraphPad Software | RRID:SCR_002798 |
| BioRender (Preparation of Graphical Abstract) | © 2024 BioRender. | https://www.biorender.com/RRID: SCR_018361 |
| ImageJ 1.51j8 (western blotting, TTC) | Wayne Rasband, NIH |
http://imagej.nih.gocij RRID:SCR_003070 |
| SoftMax® Pro software | Molecular Devices Japan |
https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software RRID:SCR_014240 |
| EZ-C1 Free viewer Gold Version 3.90 (immunohistochemistry) | Nikon | RRID:SCR_014277 |
| Multigauge (western blotting) | FUJI-FILM | RRID:SCR_014299 |
| Other | ||
| GAI-1 | Itakura et al.53, https://doi.org/10.1016/j.bbrc.2015.09.150. | N/A |
| GAI-2 | Present study | N/A |
| GAI-3 | Present study | N/A |
| GAI-4 | Present study | N/A |
| GAI-5 | Present study | N/A |
| GAI-6 | Present study | N/A |
| GAI-7 | Present study | N/A |
| GAI-8 | Present study | N/A |
| GAI-9 | Present study | N/A |
| GAI-10 | Present study | N/A |
| GAI-11 | Present study | N/A |
| GAI-12 | Present study | N/A |
| GAI-13 | Present study | N/A |
| GAI-14 | Present study | N/A |
| GAI-15 | Present study | N/A |
| GAI-16 | Present study | N/A |
| GAI-17 | Present study | N/A |
| GAI-18 | Present study | N/A |
| GAI-19 | Present study | N/A |
| GAI-20 | Present study | N/A |
| GAI-21 | Present study | N/A |
| GSH | Sigma-Aldrich | Cat #G4251 |