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. 2025 May 2;28(6):112564. doi: 10.1016/j.isci.2025.112564
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit anti-AIF polyclonal antibody R&D Systems Cat# AF1457, RRID: AB_2224516
Mouse anti-cytochrome-c monoclonal antibody BD Biosciences Cat# 556432, RRID: AB_396416
Mouse anti-GAPDH monoclonal antibody (clone 6C5) Millipore Cat# MAB374
RRID: AB_2107445
Rabbit anti-GAPDH polyclonal antibody Yamaji et al. 2003, https://www.sciencedirect.com/science/article/pii/S016748890200397X?via%3Dihub N/A
Mouse anti-glial fibrillary acidic protein (GFAP) monoclonal antibody (Clone 6F2) Agilent Technologies (DAKO) Cat# M0761
RRID: AB_2109952
Rabbit anti-H2B polyclonal antibody Sigma-Aldrich (Upstate) Cat# SAB4503276
RRID: AB_10747200
Rabbit anti-MAP2 rabbit polyclonal antibody Millipore Cat# AB5622
RRID: AB_91939
Rabbit anti-myc polyclonal antibody (A-14) Santa Cruz Biotechnology Cat# sc-789
RRID: AB_631274
Rabbit anti-myc monoclonal antibody (Clone 9E10) Santa Cruz Biotechnology Cat# sc-40
RRID: AB_627268
Mouse anti-NeuN monoclonal antibody (Clone A60) Millipore Cat# MAB377
RRID: AB_2298772
Rabbit anti-TPI polyclonal antibody Yamaji et al. 2003, https://www.sciencedirect.com/science/article/pii/S016748890200397X?via%3Dihub N/A
Mouse anti-CIV (OxPhos Complex IV) monoclonal antibody (Clone 1D6E1A8) Invitrogen Cat# 459600
N/A
Secondary (western blotting): goat anti-mouse IgG (H + L), HRP-conjugated BIO-RAD Cat #172-1011
RRID: AB_11125936
Secondary (western blotting): goat anti-rabbit IgG (H + L), HRP-conjugated BIO-RAD Cat #172-1019
RRID: AB_11125143
Secondary (immunohistochemistry): donkey anti-mouse IgG, Alexa-Fluor 488 Thermo Fisher Scientific (Invitrogen) Cat # A32723
RRID: AB_2633275
Secondary (immunohistochemistry): donkey anti-mouse IgG, Alexa-Fluor 568 Thermo Fisher Scientific (Invitrogen) Cat# A10037
RRID: AB_11180865
Secondary (immunohistochemistry): donkey anti-rabbit IgG, Alexa-Fluor 488 Thermo Fisher Scientific (Invitrogen) Cat# A32790
RRID: AB_2762833
Secondary (immunohistochemistry): donkey anti-rabbit IgG, Alexa-Fluor 568 Thermo Fisher Scientific (Invitrogen) Cat# A10042
RRID: AB_2534017

Bacterial and virus strains

W3CG (K5 strain) Ganter et al. 1990, https://doi.org/10.1021/bi00492a013 N/A
pTRE2 Clontech (TAKARA) https://www.addgene.org/vector-database/4412/ Cat#6241-1
pTRE2-GAPDH-C152A Present study N/A
pAAV-FtTA Hikida et al. 2010, https://doi.org/10.1016/j.neuron.2010.05.011 N/A
pAAV-MCS Agilent Technologies Cat #240071
pAAV-RS Agilent Technologies Cat #240071
pHelper Agilent Technologies Cat #240071
tTA-AAV2 Hikida et al. 2010, https://doi.org/10.1016/j.neuron.2010.05.011 N/A
pBAD-HisA Thermo Fisher Scientific (Invitrogen) Cat # V430-01
pBAD-HisA-human GAPDH Nakajima et al. 2009, https://doi.org/10.1074/jbc.M109.027698 N/A
pBAD-HisA-mouse GAPDH Nakajima et al. 2015, https://doi.org/10.1074/jbc.M114.635607 N/A
pBAD-HisA-human C152A-GAPDH Nakajima et al. 2009, https://doi.org/10.1074/jbc.M109.027698 N/A

Chemicals, peptides, and recombinant proteins

Doxycycline (Dox) Sigma-Aldrich Cat # D3447
2,3,5-Triphenyl tetrazolium chloride (TTC) Sigma-Aldrich Cat # T8877
4′,6-Diamidino-2-phenylindole dihydrochloride (DAPI) DOJINDO Cat # D523
Protease inhibitor cocktail Thermo Fisher Scientific (Roche) Cat # 11836145001
Blocking One Nakalai Tesque Cat # 03953-95
Isoflurane DS Pharm Cat # 59272
Paraformaldehyde MERK-Sigma-Aldrich Cat # 158127
NOR3 DOJINDO Cat # N390
Fluorescence Mounting Medium Agilent Technologies (Dako) Cat # S3023
Deprenyl Fujimoto Pharmaceutical Co. Ltd. N/A

Experimental models: Organisms/strains

Mouse (M. musculus), C57BL/6J Jackson Laboratory JAX: 000664
RRID:IMSR_JAX:000664
C57BL/6J C152A-Tg mice Present study N/A
C57BL/6J C152A-Tg strain 2 mice Present study N/A

Oligonucleotides

C152A (mutagenesis) sense 5′-ATCAGCAATGCCTCCGCCACCACCAAC-3′ Present study N/A
C152A (mutagenesis) antisense 5′-GTTGGTGGTGGCGGAGGCATTGCTGAT-3′ Present study N/A
pBAD-HisA sequencing primer (forward)
5′- ATGCCATAGCATTTTTATCC -3′
Thermo Fisher Scientific (Invitrogen) Cat #V430-01
pBAD-HisA sequencing primer (reverse)
5′- GATTTAATCTGTATCAGG -3′
Thermo Fisher Scientific (Invitrogen) Cat #V430-01
pTRE2 sequencing primer (forward)
5′-GACCTCCATAGAAGACACCG-3′
Clontech (TAKARA) Cat# 6241-1
pTRE2 sequencing primer (reverse)
5′-TACAAGGGACATCTTCCCATTC-3′
Clontech (TAKARA) Cat# 6241-1
Primer-A forward (genotyping)
5′-GGTACCCGGGTCGAGGTAGGCGTGT-3′
Present study N/A
Primer-A reverse (genotyping)
5′-GAATTCGGGGCCGCGGAGGCT-3′
Present study N/A
Primer-B forward (genotyping)
5′-CCGTCAGATCGCCTGGAGACGCCAT-3′
Present study N/A
Primer-B reverse (genotyping)
5′-TGGTGACCAGGCGCCCAATACGACC-3′
Present study N/A

Recombinant DNA

pTRE2-C152A-GAPDH-myc Present study N/A

Cells

PC12 ATCC Cat# CRL-1721
RRID:CVCL_0481

Deposited data

Mendeley data Present study https://doi.org/10.17632/r63n4pk94p.3

Critical commercial assays

QuickChange Site-Directed Mutagenesis Kit Agilent (Stratagene) Cat # 200518
QIAquick Gel Extraction Kit Qiagen Cat # 28706
Lipofectamine 2000 Transfection Reagent Thermo Fisher Scientific (Invitrogen) Cat # 11668019
VIRA TRAP AAV Purification Kit Omega Bio-Tek Cat #V1169-00
AAV2 Titration ELISA Kit Progen Cat # PRATV
Pierce™ BCA Protein Assay Kits Thermo Fisher Scientific (Pierce) Cat # 23225
Pierce™ ECL Plus Western Blotting Substrate Thermo Fisher Scientific (Pierce) Cat # 32132
CellTiter-Glo® Luminescent Cell Viability Assay Promega Cat #G7573

Software and algorithms

AutoDock Vina The Scripps Research Institute https://vina.scripps.edu
RRID:SCR_011958
Ligplot+ European Bioinformatics Institute https://www.ebi.ac.uk/thornton-srv/software/LigPlus/RRID:SCR_018249
Pymol 3.0 Schrödinger https://pymol.org
RRID:SCR_000305
GraphPad Prism 10.2.2 GraphPad Software RRID:SCR_002798
BioRender (Preparation of Graphical Abstract) © 2024 BioRender. https://www.biorender.com/RRID: SCR_018361
ImageJ 1.51j8 (western blotting, TTC) Wayne Rasband, NIH http://imagej.nih.gocij
RRID:SCR_003070
SoftMax® Pro software Molecular Devices Japan https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software
RRID:SCR_014240
EZ-C1 Free viewer Gold Version 3.90 (immunohistochemistry) Nikon RRID:SCR_014277
Multigauge (western blotting) FUJI-FILM RRID:SCR_014299

Other

GAI-1 Itakura et al.53, https://doi.org/10.1016/j.bbrc.2015.09.150. N/A
GAI-2 Present study N/A
GAI-3 Present study N/A
GAI-4 Present study N/A
GAI-5 Present study N/A
GAI-6 Present study N/A
GAI-7 Present study N/A
GAI-8 Present study N/A
GAI-9 Present study N/A
GAI-10 Present study N/A
GAI-11 Present study N/A
GAI-12 Present study N/A
GAI-13 Present study N/A
GAI-14 Present study N/A
GAI-15 Present study N/A
GAI-16 Present study N/A
GAI-17 Present study N/A
GAI-18 Present study N/A
GAI-19 Present study N/A
GAI-20 Present study N/A
GAI-21 Present study N/A
GSH Sigma-Aldrich Cat #G4251