Table 2.

Summary of the scanning results using the profiles of NtcA binding sites and −10 like boxes

Genome	No. of transcription units	Cutoffa	P-value at cutoff	Percentile at cutoff	No. of sites predicted at cutoff	Sensitivity at cutoff	Sensitivity at P < 0.01
CCMP1375	1285	7.74	0.0193	0.0381	49	0.5958	0.5319
PCC7421	3042	7.22	0.0359	0.0533	162	0.8511	0.6809
MED4	1097	7.30	0.0893	0.1641	180	0.8085	0.8085
MIT9313	1592	7.02	0.1312	0.0766	122	0.8936	0.5106
PCC7120	4509	7.53	0.0451	0.0783	353	0.6809	0.5745
PCC6301	1805	6.76	0.1327	0.1230	222	0.9575	0.6809
PCC6803	2540	7.60	0.0158	0.0315	80	0.6809	0.5106
Thermosyn	1600	7.48	0.0156	0.0344	55	0.7234	0.6809
WH8102	1480	6.89	0.1390	0.0791	117	0.9362	0.4255
Average	2106	7.28	0.0693	0.0754	149	0.7920	0.6004

^aScore cutoff to include the sites in the training sets from the genome.