Table 1.
Sites for PRE-binding proteins within known PREs and PSEs
| Regulatory DNA | Length (bp) | Pho | GAF/Psq | Sp1/KLF | Zeste | Dsp1 | Order of sites within regulatory DNAa | Accession number (basepairs) |
|---|---|---|---|---|---|---|---|---|
| Engrailed PRE (16) | 181 | 2 | 3 | 1 | 2 | 1 | P,G,P,D,Z,Z,S,G,G | AE003825.3 (62974–63154) |
| Iab-7 PRE (53) | 219 | 3 | 2 | 1 | 3 | 1 | P,D,S,P,G,G,Z,Z,P,Z | AE003715.4 (100059–100278) |
| Iab-8 PRE (54) | 1413 | 5 | 1 | 2 | 1 | 16 | G,P,D,P,Z,D,D,D,D,D,D,P,P,S,D,D,D,D,D,D,D,D,S,P,D | AE003715.4 (119929–121341) |
| PREDUbx PRED (24) | 567 | 6 | 5 | 1 | 2 | 3 | D,D,Z,D,P,G,S,P,G,P,G,Z,G,G,P,P,P | AE003714.2 (195965–195399) |
| Engrailed PSE (14) | 450 | 2 | 3 | 3 | 4 | 2 | S,Z,D,S,G,P,G,Z,G,Z,D,P,S,Z | AE003825.3 (64078–64527) |
| Escargot PSE (14) | 985 | 1 | 6 | 2 | 4 | 3 | S,D,G,G,G,G,P,S,Z,G,Z,Z,Z,G,D,D | AE003647.3 (67517–68504) |
| Even-skipped PSE (55) | 601 | 1 | 2 | 2 | 1 | 4 | D,D,D,G,D,G,Z,S,S,P | AE003831.3 (139977–140578) |
| Proboscipedia PSE (56) | 580 | 3 | 1 | 3 | 1 | 6 | S,D,S,Z,G,D,D,D,D,D,P,S,P,P | AE003674.3 (262509–263088) |
| Minimal MCP (28) | 142 | 4 | 1 | 0 | 0 | 2 | G,P,P,P,D,P,D | AE003715.4 (69732–69885) |
| MCP 823 bp (57) | 823 | 5 | 1 | 1 | 1 | 9 | D,D,P,D,D,S,D,Z,G,P,P,P,D,P,D,D,D | AE003715.4 (69199–70021) |
aPho/Phol (P), GAGA Factor/Pipsqueak (G), Sp1/KLF family members (S), Zeste (Z), Dsp1 (D). Consensus sites used: P-GCCAT, G-GAGAG, S-RRGGYG, Z-BGAGTGV, YGAGYG, Dsp1 GAAAA.