Table 1|.

Top 5 in trans-interaction partners of Rbc1 (from highest to lowest rank) predicted by IntaRNA 2.0. The hybridization energies [kJ/mol] at 37 °C, calculated between Rbc1 and the full transcripts of the top 5 predicted targets of Rbc1 using IntaRNA 2.0. *Base pairing percentage is calculated as the ratio between the predicted number of paired nucleotides at 37 °C and the section of which an interaction can be predicted – see Methods for details.

Annotation / locus tag	Hybridization energy at 37 °C [kJ/mol]	Stretch of base pairing at 37 °C in Percentage*
ssaA / SAUSA300_2249	−81.1	230/303–75.9 %
essH / SAUSA300_0277	−77.7	209/300–69.7 %
SAUSA300_2503	−70.8	135/178–75.8 %
sle1 / SAUSA300_0438	−63.5	185/275–67.3 %
SAUSA300_0739	−40.3	131/205–63.5 %