Table 1.
Characteristics of microsatellite markers
| Marker | tHet | Ta (°C) | Size range (bp) | Site | Position (Kb) | CA strand primer | GT strand primer |
|---|---|---|---|---|---|---|---|
| CAGR1 | – | 59 | 125 | 13q13 | 30037 | AAGCACCTGGTACTAAGGGTA | TCGCGGCGGTGATCTTTTTTG |
| D13S260 | 0.77 | 59 | 158–173 | 13q12.3 | 30234 | AGATATTGTCTCCGTTCCATGA | CCCAGATATAAGGACCTGGCTA |
| D13S1493 | – | 60 | 223–248 | 13q12.3 | 31806 | ACCTGTTGTATGGCAGCAGT | GGTTGACTCTTTCCCCAACT |
| D13S267 | 0.68 | 52 | 148–162 | 13q12.3 | 32062 | GGCCTGAAAGGTATCCTC | TCCCACCATAAGCACAAG |
| D13S171 | 0.73 | 54 | 227–241 | 13q14 | 32152 | CCTACCATTGACACTCTCAG | TAGGGCCATCCATTCT |
| D13S220 | 0.67 | 52 | 191–203 | 13q12.3-q13 | 32967 | CCAACATCGGGAACTG | TGCATTCTTTAAGTCCATGTC |
| D13S219 | 0.64 | 57 | 117–127 | 13q12.3-q13 | 34956 | AAGCAAATATGCAAAATTGC | TCCTTCTGTTTCTTGACTTAACA |
| D13S894 | 0.7 | 56 | 180–200 | 13q12.3-q14.2 | 36536 | GGTGCTTGCTGTAAATATAATTG | CACTACAGCAGATTGCACCA |
| D13S263 | 0.84 | 60 | 145–165 | 13q14.1 | 40979 | CCTGGCCTGTTAGTTTTTATTGTTA | CCCAGTCTTGGGTATGTTTTTA |
| D13S126 | 0.67 | 55 | 100 | 13q14.3 | 45108 | TCACCAGTAAAATGCTATTGG | GTGATTTTCAAATTTGCTCTG |
| D13S168 | 0.77 | 53 | 173–197 | 13q14.3 | 45609 | GCCTAGCCCAGTGGTG | TGCTTGTGCCTATGTTCTTG |
| D13S153 | 0.82 | 58 | 212–236 | 13q14.1-q14.3 | 46688 | AGCATTGTTTCATGTTGGTG | CAGCAGTGAAGGTCTAAGCC |
| D13S272 | 0.66 | 60 | 131–143 | 13q14.3 | 48504 | ATACAGACTTCCCAGTGGCT | AGCTATTAAAGTTCCCTGGATAAAT |
| D13S152 | 0.78 | 58 | 133–143 | 13q21.3-q22 | 71232 | CACATAGGCAACATAGGCAC | TCTGTATTCGCTTTCCCTG |
| D13S770 | – | 57 | 234–258 | 13q32-13q32 | 97329 | GCTGTGACTTTTAGGCCAAA | TGTGATGTCTACAACTCCAGG |
| D13S248 | 0.833 | 50 | 214 | 13q32-13q34 | 105318 | ACTTAAATGTCCATCAATAAAT | TGATTGGCTTTTTTTACTTAC |
| D3S1285 | 0.736 | 62 | 173−215 | 3p14.2-3p14.1 | 24163 | ATTTAGAAAACCCATACAGCATGGC | TCTGTTCATCACAGGGGTAGCATC |
| MICA | 0.75 | 55 | 179–196 | 3p21.3 | 31484 | CCTTTTTTTAGGGAAAGTGC | CCTTACCATCTCCAGAAACTGC |
| D3S2432 | 0.774 | 59 | 118–170 | 3p24.2-3p22 | 31534 | GGCAGGCAGGTAGATAGACA | ACACTAAACA |
| D3S1768 | 0.740 | 53 | 186–206 | 3p23 | 34599 | GGTTGCTGCCAAAGATTAGA | CACTGTGATTTGCTGTTGGA |
| D3S1611 | 0.857 | 58 | 252–268 | 3p22.3 | 37044 | CCCCAAGGCTGCACTT | AGCTGAGACTACAGGCATTTG |
| RPL14 | – | 59 | 140 | 3p22-p21.2 | 40473 | AAGCACCTGGTACTAAGGGTA | TCGCGGCGGTGATCTTTTTTG |
| D3S2452 | 0.642 | 58 | 150–166 | 3p21.1-3p14.2 | 58067 | GCTTGCAGATAGCAGATCGT | TATAAGATTAGTCAGGGCTCGC |
| D3S1766 | 0.727 | 55 | 208–232 | 3p21.1-3p14.2 | 58350 | ACCACATGAGCCAATTCTGT | ACCCAATTATGGTGTTGTTACC |
| D3S3040 | 0.607 | 57 | 212–213 | 3p14.3 | 58957 | AAGGCCTTCAGACTCAACCT | TTAATCTGGGCTCTCCAGAG |
| D3S4542 | 0.684 | 53 | 236–260 | 3p14.1-3p14.2 | 63895 | TCCAGAGAAACAGAACCGAC | TGCAGATTTTGGACTTGTCA |
| D3S3571 | 0.92 | 57 | 216–275 | 3pter-3qter | 64340 | CTGAGGCTCTGCAATGTTTAG | CAGGCAAGGTTATCTGGG |
| D3S3644 | 0.644 | 60 | 164–176 | 3p14.1-3p14.2 | 64731 | ATGGGGGCTCTATGGCTTATCA | GCTCAAATGCTCAAAAAGTAGCACC |
| D3S2329 | 0.86 | 53 | 399 | 3p14.2-p14.1 | 64981 | AGCTGAAGAGTATTCCATAG | GTCTATCAATGGATAATTGGA |
| D5S1384 | 0.75 | 61 | 145 | 5pter-5qter | 118906 | CTAAACAGAAAAGAGCTAAGCCTA | TACCTACCTATATGCTCCCAATC |
| D5S592 | 0.86 | 56 | 145–175 | 5pter-5qter | 119177 | AGACAGACAGAGAGATTAGA | AGTAAAGTGAGTGGAGAGC |
| D9S157 | 0.849 | 64 | 133–149 | 9p22.1 | 17867 | AGCAAGGCAAGCCACATTTC | TGGGGATGCCCAGATAACTATATC |
| D9S169 | 0.838 | 63 | 259–275 | 9p21.2 | 27229 | AGAGACAGATCCAGATCCCA | TAACAACTCACTGATTATTTAAGGC |
| D9S161 | 0.782 | 61 | 119–135 | 9p13.3 | 27801 | TGCTGCATAACAAATTACCAC | CATGCCTAGACTCCTGATCC |
| D9S165 | 0.76 | 60 | 238 | 9p21-9q21 | 33163 | GACTTTGGCTGCTAGATGTG | CAGAGGAGTTACAAATATAGACAGG |
tHet theoretical heterozygosity, Ta temperature of annealing, – no information available