Table 2. Genome assembly data for Podarcis melisellensis.
| Genome assembly | Haplotype 1 | Haplotype 2 |
|---|---|---|
| Assembly name | rPodMel1.hap1.1 | rPodMel1.hap2.1 |
| Assembly accession | GCA_964234715.1 | GCA_964234825.1 |
| Assembly level | chromosome | chromosome |
| Span (Mb) | 1,574.91 | 1,437.04 |
| Number of contigs | 1,208 | 954 |
| Number of scaffolds | 385 | 200 |
| Longest scaffold (Mb) | 136.76 | 135.53 |
| Assembly metrics
*
(benchmark) |
Haplotype 1 | Haplotype 2 |
| Contig N50 length
(≥ 1 Mb) |
3.03 Mb | 3.11 Mb |
| Scaffold N50 length
(= chromosome N50) |
91.07 Mb | 92.09 Mb |
| Consensus quality (QV) (≥ 40) | 62.3 | 62.5 |
| k-mer completeness | 88.41% | 84.66% |
| Combined
k-mer
completeness (≥ 95%) |
99.63% | |
| BUSCO**
(S > 90%; D < 5%) |
C:95.3%[S:93.3%,D:2.0%],
F:0.8%,M:4.0%,n:7,480 |
C:92.1%[S:90.4%,D:1.7%],
F:1.0%,M:6.9%,n:7,480 |
| Percentage of assembly
mapped to chromosomes (≥ 90%) |
94.94% | 97.63% |
| Sex chromosomes (localised
homologous pairs) |
W and Z | - |
| Organelles
(one complete allele) |
Mitochondrial genome:
18.2 kb |
- |
* BUSCO scores based on the sauropsida_odb10 BUSCO set using version 5.5.0. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison.