AI	Artificial intelligence
ANN	Artificial neural network
ATAC-seq	Assay for transposase-accessible chromatin using sequencing
AUC	Area under the curve
CITE-seq	Cellular indexing of transcriptomes and epitopes by sequencing
CNN	Convolutional neural network
CNV	Copy number variation
CRF	Conditional random field
CTC	Connectionist temporal classification
ctDNA	Circulating tumor DNA
DL	Deep learning
DEA	Differential expression analysis
DMR	Differentially methylated region
EMBL-EBI	European Bioinformatics Institute
GATK	Genome Analysis Toolkit
GBM	Gradient boosting machine
GEO	Gene Expression Omnibus
GNN	Graph neural network
GRN	Gene regulatory network
HDP	Hierarchical Dirichlet process
HGP	Human Genome Project
HMM	Hidden Markov model
IGCN	Integrative graph convolutional network
IPD	Interpulse duration
LSTM	Long short-term memory
ML	Machine learning
m5C	5-methylcytosine
m6A	N6-methyladenosine
hm5C	5-hydroxymethylcytosine
ML	Machine learning
mRNA	Messenger RNA
NGS	Next-generation sequencing
ONT	Oxford Nanopore Technologies
PCA	Principal component analysis
PCR	Polymerase chain reaction
RF	Random forest
RNN	Recurrent neural network
scRNA-seq	Single-cell RNA sequencing
SdAs	Stacked denoising autoencoders
SNP	Single nucleotide polymorphism
SVM	Support vector machine
TCGA	The Cancer Genome Atlas
TGS	Third-generation sequencing
t-SNE	t-distributed stochastic neighbor embedding
UMAP	Uniform manifold approximation and projection
VAE	Variational autoencoder
WGBS	Whole-genome bisulfite sequencing