AlignGVGD	Align Grantham Variation Grantham Deviation
CUPSAT	Cologne University Protein Stability Analysis Tool
DDG	Change in the change in Gibbs free energy (Double changes intended)
GAG	Glycosaminoglycans
GROMACS	Groningen Machine for Chemical Simulations
MD	Molecular Dynamics
MMPBSA	Molecular mechanics Poisson–Boltzmann surface area
Rg	Radius of Gyration
RI	Reliable Index
RMSD	Root Mean Square Deviation
RMSF	Root Mean Square Fluctuation
SASA	Solvent Accessible Surface Area
SNAP	Screening for Non-Acceptable Polymorphisms
SPDBV	Swiss PDB Viewer