Table 2.
Virial etiology identification of CAP in the SEA region. Detection of pathogens is shown by actual number.
| Study | Total tested | Positive rate (%) | FLU | hRV/EV | hMPV | RSV | PIV(I-IV) | BoV | Adv | hCoV | Other |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Rammaert et al. [31] | 1270 | 11.4 | 17 | 60 | - | 24 | - | - | - | 26 | 18 |
| Vong et al. [32] | 959 | 14.3 | 16 | 68 | 7 | 23 | - | - | - | 18 | 6 |
| Farida et al. [33] | 148 | 22.3 | 17 | 6 | 1 | 1 | 5 | - | 2 | 1 | - |
| Toh et al. [34] | 599 | 48.1 | 75 | 25 | - | 122 | 21 | - | 62 | 6 | - |
| Pang et al. [35] | 1106 | 10.3 | 114 | - | - | - | - | - | - | - | - |
| Ng et al [36] | 111 | 87.4a | NR | 40 | NR | 26 | NR | 4 | NR | NR | 27 |
| Suzuki et al. [37] | 819 | 51.6 | 15 | 189 | 17 | 165 | 8 | 2 | 15 | 2 | 10 |
| Lupisan et al. [38] | 535 | 13.1 | 28 | 18b | 6 | 11 | 4 | - | 3 | - | - |
| Siow et al. [39] | 100 | 33.0 | 15 | 10 | 2 | 0 | 3 | - | 1 | 2 | - |
| Lim et al. [40] | 520 | 4.2 | 2 | 3 | 2 | 1 | - | - | 3 | 1 | 10 |
| Fry et al. (2007) [41] | 1168 | 4.5 | NR | NR | NR | NR | NR | 53 | NR | NR | NR |
| Hara et al. [42] | 119 | 9.2 | 7 | 2 | 0 | 2 | 0 | - | - | 0 | - |
| Pratheepamornkull et al. [43] | 91 | 46.2 | 0 | 11 | - | 22 | 0 | - | 9 | 0 | - |
| Kositpantawong et al. [44] | 1584 | 9.5 | 151 | - | - | - | - | - | - | - | - |
| Bunthi et al. [12] | 223 | 85.2 | 7 | 64 | 8 | 51 | 13 | 40 | 31 | 10 | 103 |
| Osman et al. [45] | 242 | 21.5 | 47 | - | - | 5 | - | - | - | - | - |
| Poovieng et al. [46] | 139 | 74.4 | 130 | - | - | - | - | - | - | - | 16 |
| Wanlapakorn et al. [47] | 100 | 93.0c | NR | 48 | NR | 38 | 7 | NR | NR | NR | NR |
| Takahashi et al. [48] | 154 | 48.1 | 45 | 22 | 0 | 4 | 0 | 0 | 3 | 0 | - |
Adv, adenovirus; BoV, boca virus; Entero, entero viruses; FLU, influenza viruses which include influenza A (H3N2, H1N1, pH1N1) and influenza B viruses; hCoV, human coronaviruses which includes 229E, OC43, NL63, HKU1, MERS-CoV, SARS-CoV, SARS-CoV-2 viruses; hRV/EV, human rhinovirus/enterovirus; hMPV, human metapneumovirus; NR, not reported; PIV(I-IV), parainfluenza virus type I to IV; RSV, respiratory syncytial virus; Others means those viruses not mentioned under individual viruses within the same study.
87.4 is the positive rate of four viruses (RV/EV, RSV, BoV, and SARS-CoV-2); the positive rate of the remaining individual viruses was not presented in the paper.
7 RV and one EV.
93.0% is based on the reported positive rate (only the top three common viruses were reported in the article.