Table 1.

Indicators for model predictions of Cα AMSDs for full protein set

	Model	Density*	〈Δ〉†	Range of Δ	〈ρ〉†	Range of ρ
a	LDM	all/ref/fix	0.89  ± 0.27	0.63–2.19	0.62  ± 0.09	0.41–0.80
b	LDM	all/ref/scd	0.86  ± 0.26	0.62–2.09	0.64  ± 0.09	0.43–0.81
c	LDM	all/xtl/fix	0.75  ± 0.12	0.52–1.21	0.67  ± 0.09	0.45–0.83
d	LDM	all/xtl/scd	0.72  ± 0.11	0.53–1.13	0.70  ± 0.09	0.49–0.85
e	P-GNM	Cα/ref/fix	1.08  ± 0.42	0.65–3.06	0.58  ± 0.17	0.05–0.84
f	LDM	Cα/ref/fix	1.02  ± 0.32	0.74–2.58	0.51  ± 0.11	0.20–0.70
g	LDM	Cα/ref/scd	0.97  ± 0.29	0.68–2.32	0.58  ± 0.08	0.42–0.75

In all calculations, the cutoff radius R_C was set equal to the distance, R, of the second minimum in the Cα–Cα radial density. 

^*Contact density is based on nonhydrogen atoms (all) or Cα atoms (Cα) in reference molecule (ref) or entire crystal (xtl) and is calculated with fixed (fix) or self-consistently distributed (scd) atoms. 

^† Mean value ± one standard deviation.