Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 2001 Nov 1;359(Pt 3):497–505. doi: 10.1042/0264-6021:3590497

Identification of the autophosphorylation sites and characterization of their effects in the protein kinase DYRK1A.

S Himpel 1, P Panzer 1, K Eirmbter 1, H Czajkowska 1, M Sayed 1, L C Packman 1, T Blundell 1, H Kentrup 1, J Grötzinger 1, H G Joost 1, W Becker 1
PMCID: PMC1222170  PMID: 11672423

Abstract

Protein kinases of the DYRK ('dual-specificity tyrosine-regulated kinase') family are characterized by a conserved Tyr-Xaa-Tyr motif (Tyr-319-Tyr-321) in a position exactly corresponding to the activation motif of the mitogen-activated protein kinase (MAP kinase) family (Thr-Xaa-Tyr). In a molecular model of the catalytic domain of DYRK1A, the orientation of phosphorylated Tyr-321 is strikingly similar to that of Tyr-185 in the known structure of the activated MAP kinase, extracellular-signal-regulated kinase 2. Consistent with our model, substitution of Tyr-321 but not of Tyr-319 by phenylalanine markedly reduced the enzymic activity of recombinant DYRK1A expressed in either Escherichia coli or mammalian cells. Direct identification of phosphorylated residues by tandem MS confirmed that Tyr-321, but not Tyr-319, was phosphorylated. When expressed in COS-7 cells, DYRK1A was found to be fully phosphorylated on Tyr-321. A catalytically inactive mutant of DYRK1A contained no detectable phosphotyrosine, indicating that Tyr-321 is autophosphorylated by DYRK1A. MS identified Tyr-111 and Ser-97 as additional autophosphorylation sites in the non-catalytic N-terminal domain of bacterially expressed DYRK1A. Enzymic activity was not affected in the DYRK1A-Y111F mutant. The present experimental data and the molecular model indicate that the activity of DYRK1A is dependent on the autophosphorylation of a conserved tyrosine residue in the activation loop.

Full Text

The Full Text of this article is available as a PDF (351.9 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abe S., Yagi T., Ishiyama S., Hiroe M., Marumo F., Ikawa Y. Molecular cloning of a novel serine/threonine kinase, MRK, possibly involved in cardiac development. Oncogene. 1995 Dec 7;11(11):2187–2195. [PubMed] [Google Scholar]
  2. Alahari S. K., Schmidt H., Käufer N. F. The fission yeast prp4+ gene involved in pre-mRNA splicing codes for a predicted serine/threonine kinase and is essential for growth. Nucleic Acids Res. 1993 Aug 25;21(17):4079–4083. doi: 10.1093/nar/21.17.4079. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Becker W., Joost H. G. Structural and functional characteristics of Dyrk, a novel subfamily of protein kinases with dual specificity. Prog Nucleic Acid Res Mol Biol. 1999;62:1–17. doi: 10.1016/s0079-6603(08)60503-6. [DOI] [PubMed] [Google Scholar]
  4. Becker W., Weber Y., Wetzel K., Eirmbter K., Tejedor F. J., Joost H. G. Sequence characteristics, subcellular localization, and substrate specificity of DYRK-related kinases, a novel family of dual specificity protein kinases. J Biol Chem. 1998 Oct 2;273(40):25893–25902. doi: 10.1074/jbc.273.40.25893. [DOI] [PubMed] [Google Scholar]
  5. Bellon S., Fitzgibbon M. J., Fox T., Hsiao H. M., Wilson K. P. The structure of phosphorylated p38gamma is monomeric and reveals a conserved activation-loop conformation. Structure. 1999 Sep 15;7(9):1057–1065. doi: 10.1016/s0969-2126(99)80173-7. [DOI] [PubMed] [Google Scholar]
  6. Biemann K. Contributions of mass spectrometry to peptide and protein structure. Biomed Environ Mass Spectrom. 1988 Oct;16(1-12):99–111. doi: 10.1002/bms.1200160119. [DOI] [PubMed] [Google Scholar]
  7. Bähler J., Nurse P. Fission yeast Pom1p kinase activity is cell cycle regulated and essential for cellular symmetry during growth and division. EMBO J. 2001 Mar 1;20(5):1064–1073. doi: 10.1093/emboj/20.5.1064. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Bähler J., Pringle J. R. Pom1p, a fission yeast protein kinase that provides positional information for both polarized growth and cytokinesis. Genes Dev. 1998 May 1;12(9):1356–1370. doi: 10.1101/gad.12.9.1356. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Canagarajah B. J., Khokhlatchev A., Cobb M. H., Goldsmith E. J. Activation mechanism of the MAP kinase ERK2 by dual phosphorylation. Cell. 1997 Sep 5;90(5):859–869. doi: 10.1016/s0092-8674(00)80351-7. [DOI] [PubMed] [Google Scholar]
  10. Garrett S., Broach J. Loss of Ras activity in Saccharomyces cerevisiae is suppressed by disruptions of a new kinase gene, YAKI, whose product may act downstream of the cAMP-dependent protein kinase. Genes Dev. 1989 Sep;3(9):1336–1348. doi: 10.1101/gad.3.9.1336. [DOI] [PubMed] [Google Scholar]
  11. Gross T., Lützelberger M., Weigmann H., Klingenhoff A., Shenoy S., Käufer N. F. Functional analysis of the fission yeast Prp4 protein kinase involved in pre-mRNA splicing and isolation of a putative mammalian homologue. Nucleic Acids Res. 1997 Mar 1;25(5):1028–1035. doi: 10.1093/nar/25.5.1028. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Guimerá J., Casas C., Pucharcòs C., Solans A., Domènech A., Planas A. M., Ashley J., Lovett M., Estivill X., Pritchard M. A. A human homologue of Drosophila minibrain (MNB) is expressed in the neuronal regions affected in Down syndrome and maps to the critical region. Hum Mol Genet. 1996 Sep;5(9):1305–1310. doi: 10.1093/hmg/5.9.1305. [DOI] [PubMed] [Google Scholar]
  13. Hanks S. K., Quinn A. M., Hunter T. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. Science. 1988 Jul 1;241(4861):42–52. doi: 10.1126/science.3291115. [DOI] [PubMed] [Google Scholar]
  14. Himpel S., Tegge W., Frank R., Leder S., Joost H. G., Becker W. Specificity determinants of substrate recognition by the protein kinase DYRK1A. J Biol Chem. 2000 Jan 28;275(4):2431–2438. doi: 10.1074/jbc.275.4.2431. [DOI] [PubMed] [Google Scholar]
  15. Hughes K., Nikolakaki E., Plyte S. E., Totty N. F., Woodgett J. R. Modulation of the glycogen synthase kinase-3 family by tyrosine phosphorylation. EMBO J. 1993 Feb;12(2):803–808. doi: 10.1002/j.1460-2075.1993.tb05715.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kassis S., Melhuish T., Annan R. S., Chen S. L., Lee J. C., Livi G. P., Creasy C. L. Saccharomyces cerevisiae Yak1p protein kinase autophosphorylates on tyrosine residues and phosphorylates myelin basic protein on a C-terminal serine residue. Biochem J. 2000 Jun 1;348(Pt 2):263–272. [PMC free article] [PubMed] [Google Scholar]
  17. Kentrup H., Becker W., Heukelbach J., Wilmes A., Schürmann A., Huppertz C., Kainulainen H., Joost H. G. Dyrk, a dual specificity protein kinase with unique structural features whose activity is dependent on tyrosine residues between subdomains VII and VIII. J Biol Chem. 1996 Feb 16;271(7):3488–3495. doi: 10.1074/jbc.271.7.3488. [DOI] [PubMed] [Google Scholar]
  18. Kim Y. H., Choi C. Y., Lee S. J., Conti M. A., Kim Y. Homeodomain-interacting protein kinases, a novel family of co-repressors for homeodomain transcription factors. J Biol Chem. 1998 Oct 2;273(40):25875–25879. doi: 10.1074/jbc.273.40.25875. [DOI] [PubMed] [Google Scholar]
  19. Knighton D. R., Zheng J. H., Ten Eyck L. F., Ashford V. A., Xuong N. H., Taylor S. S., Sowadski J. M. Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science. 1991 Jul 26;253(5018):407–414. doi: 10.1126/science.1862342. [DOI] [PubMed] [Google Scholar]
  20. Leder S., Weber Y., Altafaj X., Estivill X., Joost H. G., Becker W. Cloning and characterization of DYRK1B, a novel member of the DYRK family of protein kinases. Biochem Biophys Res Commun. 1999 Jan 19;254(2):474–479. doi: 10.1006/bbrc.1998.9967. [DOI] [PubMed] [Google Scholar]
  21. Lee K., Deng X., Friedman E. Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells. Cancer Res. 2000 Jul 1;60(13):3631–3637. [PubMed] [Google Scholar]
  22. Matsuo R., Ochiai W., Nakashima K., Taga T. A new expression cloning strategy for isolation of substrate-specific kinases by using phosphorylation site-specific antibody. J Immunol Methods. 2001 Jan 1;247(1-2):141–151. doi: 10.1016/s0022-1759(00)00313-6. [DOI] [PubMed] [Google Scholar]
  23. Matsushime H., Jinno A., Takagi N., Shibuya M. A novel mammalian protein kinase gene (mak) is highly expressed in testicular germ cells at and after meiosis. Mol Cell Biol. 1990 May;10(5):2261–2268. doi: 10.1128/mcb.10.5.2261. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Mellon P. L., Windle J. J., Goldsmith P. C., Padula C. A., Roberts J. L., Weiner R. I. Immortalization of hypothalamic GnRH neurons by genetically targeted tumorigenesis. Neuron. 1990 Jul;5(1):1–10. doi: 10.1016/0896-6273(90)90028-e. [DOI] [PubMed] [Google Scholar]
  25. Miyata Y., Nishida E. Distantly related cousins of MAP kinase: biochemical properties and possible physiological functions. Biochem Biophys Res Commun. 1999 Dec 20;266(2):291–295. doi: 10.1006/bbrc.1999.1705. [DOI] [PubMed] [Google Scholar]
  26. Moilanen A. M., Karvonen U., Poukka H., Jänne O. A., Palvimo J. J. Activation of androgen receptor function by a novel nuclear protein kinase. Mol Biol Cell. 1998 Sep;9(9):2527–2543. doi: 10.1091/mbc.9.9.2527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Murai H., Okazaki M., Kikuchi A. Tyrosine dephosphorylation of glycogen synthase kinase-3 is involved in its extracellular signal-dependent inactivation. FEBS Lett. 1996 Aug 26;392(2):153–160. doi: 10.1016/0014-5793(96)00806-x. [DOI] [PubMed] [Google Scholar]
  28. Okui M., Ide T., Morita K., Funakoshi E., Ito F., Ogita K., Yoneda Y., Kudoh J., Shimizu N. High-level expression of the Mnb/Dyrk1A gene in brain and heart during rat early development. Genomics. 1999 Dec 1;62(2):165–171. doi: 10.1006/geno.1999.5998. [DOI] [PubMed] [Google Scholar]
  29. Shi L., Potts M., Kennelly P. J. The serine, threonine, and/or tyrosine-specific protein kinases and protein phosphatases of prokaryotic organisms: a family portrait. FEMS Microbiol Rev. 1998 Oct;22(4):229–253. doi: 10.1111/j.1574-6976.1998.tb00369.x. [DOI] [PubMed] [Google Scholar]
  30. Smith D. J., Stevens M. E., Sudanagunta S. P., Bronson R. T., Makhinson M., Watabe A. M., O'Dell T. J., Fung J., Weier H. U., Cheng J. F. Functional screening of 2 Mb of human chromosome 21q22.2 in transgenic mice implicates minibrain in learning defects associated with Down syndrome. Nat Genet. 1997 May;16(1):28–36. doi: 10.1038/ng0597-28. [DOI] [PubMed] [Google Scholar]
  31. Song W. J., Chung S. H., Kurnit D. M. The murine Dyrk protein maps to chromosome 16, localizes to the nucleus, and can form multimers. Biochem Biophys Res Commun. 1997 Feb 24;231(3):640–644. doi: 10.1006/bbrc.1997.6154. [DOI] [PubMed] [Google Scholar]
  32. Souza G. M., Lu S., Kuspa A. YakA, a protein kinase required for the transition from growth to development in Dictyostelium. Development. 1998 Jun;125(12):2291–2302. doi: 10.1242/dev.125.12.2291. [DOI] [PubMed] [Google Scholar]
  33. Tejedor F., Zhu X. R., Kaltenbach E., Ackermann A., Baumann A., Canal I., Heisenberg M., Fischbach K. F., Pongs O. minibrain: a new protein kinase family involved in postembryonic neurogenesis in Drosophila. Neuron. 1995 Feb;14(2):287–301. doi: 10.1016/0896-6273(95)90286-4. [DOI] [PubMed] [Google Scholar]
  34. Wang Q. M., Fiol C. J., DePaoli-Roach A. A., Roach P. J. Glycogen synthase kinase-3 beta is a dual specificity kinase differentially regulated by tyrosine and serine/threonine phosphorylation. J Biol Chem. 1994 May 20;269(20):14566–14574. [PubMed] [Google Scholar]
  35. Wetsel W. C., Mellon P. L., Weiner R. I., Negro-Vilar A. Metabolism of pro-luteinizing hormone-releasing hormone in immortalized hypothalamic neurons. Endocrinology. 1991 Sep;129(3):1584–1595. doi: 10.1210/endo-129-3-1584. [DOI] [PubMed] [Google Scholar]
  36. Woods Y. L., Rena G., Morrice N., Barthel A., Becker W., Guo S., Unterman T. G., Cohen P. The kinase DYRK1A phosphorylates the transcription factor FKHR at Ser329 in vitro, a novel in vivo phosphorylation site. Biochem J. 2001 May 1;355(Pt 3):597–607. doi: 10.1042/bj3550597. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Wu J., Rossomando A. J., Her J. H., Del Vecchio R., Weber M. J., Sturgill T. W. Autophosphorylation in vitro of recombinant 42-kilodalton mitogen-activated protein kinase on tyrosine. Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9508–9512. doi: 10.1073/pnas.88.21.9508. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Zhan X. L., Hong Y., Zhu T., Mitchell A. P., Deschenes R. J., Guan K. L. Essential functions of protein tyrosine phosphatases PTP2 and PTP3 and RIM11 tyrosine phosphorylation in Saccharomyces cerevisiae meiosis and sporulation. Mol Biol Cell. 2000 Feb;11(2):663–676. doi: 10.1091/mbc.11.2.663. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES