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. 2025 Apr 16;6(2):103776. doi: 10.1016/j.xpro.2025.103776
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

eFluor 450 anti-mouse CD326 (EpCAM) monoclonal antibody (clone G8.8) eBioscience Cat# 48-5791-82, RRID:AB_10717090
BV480 rat anti-mouse CD4 (clone RM4-5) BD Biosciences Cat# 565634, RRID:AB_2739312
Alexa Fluor 488 rat anti-mouse CD4 (clone RM4-5) BD Biosciences Cat# 557667, RRID:AB_396779
Alexa Fluor 647 rat anti-mouse CD4 (clone RM4-5) BD Biosciences Cat# 557681,
RRID:AB_396791
Alexa Fluor 594 anti-mouse CD326 (Ep-CAM) antibody (clone G8.8) BioLegend Cat# 118222, RRID:AB_2563322
Alexa Fluor 488 anti-mouse CD3 antibody (clone 17A2) BioLegend Cat# 100210, RRID:AB_389301
Alexa Fluor 647 anti-mouse CD31 antibody (clone MEC13.3) BioLegend Cat# 102516,
RRID:AB_2161029
Alexa Fluor 488 anti-mouse F4/80 monoclonal antibody (clone BM8) eBioscience Cat# 53-4801-82, RRID:AB_469915
BV480 rat anti-mouse CD45R/B220 (clone RA3-6B2) BD Biosciences Cat# 565631,
RRID:AB_2739311
CD45R (B220) monoclonal antibody (RA3-6B2), eFluor 450 eBioscience Cat# 48-0452-82, RRID: AB_1548761
Alexa Fluor 647 anti-mouse CD8a antibody (clone 53–6.7) BioLegend Cat# 100724,
RRID: AB_389326
CD4 monoclonal antibody (RM4-5), Alexa Fluor 700 eBioscience Cat# 56-0042-82,
RRID:AB_494000
Alexa Fluor 488 anti-mouse LYVE1 monoclonal antibody (clone ALY7) eBioscience Cat# 53-0443-82, RRID:AB_1633415
LYVE1 monoclonal antibody (ALY7), eFluor 450 eBioscience Cat# 48-0443-80, RRID: AB_2784722
Alexa Fluor 488 anti-GFP antibody BioLegend Cat# 338008,
RRID: AB_2563287
eFluor 570 anti-mouse Foxp3 monoclonal antibody (clone FJK-16s) eBioscience Cat# 41-5773-82, RRID:AB_11219073
Alexa Fluor 647 mouse anti-Ki-67 (clone B56) BD Biosciences Cat# 561126, RRID:AB_10611874
Alexa Fluor 700 mouse anti-Ki-67 (clone B56) BD Biosciences Cat# 561277, RRID:AB_10611571
BV480 rat anti-mouse CD8a (clone ALY7) BD Biosciences Cat# 566096, RRID:AB_2739500
Goat anti-rabbit IgG (H + L) cross-adsorbed secondary antibody, Alexa Fluor 647 Invitrogen Cat# A-21244,
RRID:AB_2535812

Chemicals, peptides, and recombinant proteins

Fixation and permeabilization solution BD Biosciences Cat# 554722
Normal goat serum Jackson ImmunoResearch Laboratories, Inc. Cat# 005-000-121, RRID: AB_2336990
Normal mouse serum Jackson ImmunoResearch Laboratories, Inc. Cat# 015-000-120, RRID: AB_2337194
Normal rabbit serum Jackson ImmunoResearch Laboratories, Inc. Cat# 011-000-120, RRID: AB_2337123
Normal rat serum Jackson ImmunoResearch Laboratories, Inc. Cat# 012-000-120, RRID: AB_2337141
PBS HyClone Cat# SH30256.01
Triton X-100 Sangon Biotech Cat#A600198-0500
Tissue-Tek O.C.T. compound Sakura Finetek Cat# 4583
Sucrose Sigma-Aldrich Cat# v900116
Fluoromount-G SouthernBiotech Cat# 0100-01
DAPI Sigma-Aldrich Cat# D9542
Bovine serum albumin Sigma-Aldrich Cat# B2064-100G

Experimental models: Organisms/strains

Mouse: ApcMin/+ The Jackson Laboratory JAX: 002020
Mouse: C57BL/6 The Jackson Laboratory JAX: 000664
Mouse: Foxp3DTR The Jackson Laboratory JAX:016958

Software and algorithms

Prism 8 GraphPad https://www.graphpad.com/
Imaris 10.0 Bitplane https://imaris.oxinst.com/
R 4.3.2 N/A https://www.r-project.org/
Python 2.7 N/A https://www.python.org/
Leica LAS X Suite software Leica N/A

Other

Charged slides Premiere Cat# 9308W
Standard NorGlas microscope cover glass MeVid Cat# CS01-2450
Reagent reservoirs, 7 mL, 8 channels Sangon Biotech Cat#F619713-0001
Hydrophobic Barrier PAP Pen Vector Cat# H-4000
Leica CM1950 cryostat Leica CM1950
Leica TCS SP8 Leica N/A
Leica STELLARIS 8 STED Leica N/A