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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 2002 Mar 5;99(5):2597–2602. doi: 10.1073/pnas.032480699

Asymptotic solution of the cylindrical nonlinear Poisson–Boltzmann equation at low salt concentration: Analytic expressions for surface potential and preferential interaction coefficient

Irina A Shkel 1,, Oleg V Tsodikov 1,, M Thomas Record Jr 1
PMCID: PMC122393  PMID: 11880615

Abstract

The analytic solution to the nonlinear Poisson–Boltzmann equation describing the ion distributions surrounding a nucleic acid or other cylindrical polyions as a function of polyion structural quantities and salt concentration ([salt]) has been sought for more than 80 years to predict the effect of these quantities on the thermodynamics of polyion processes. Here we report an accurate asymptotic solution of the cylindrical nonlinear Poisson–Boltzmann equation at low to moderate concentration of a symmetrical electrolyte (≤0.1 M 1:1 salt). The approximate solution for the potential is derived as an asymptotic series in the small parameter ɛ−1, where ɛ ≡ κ−1/a, the ratio of the Debye length (κ−1) to the polyion radius (a). From the potential at the polyion surface, we obtain the coulombic contribution to the salt–polyelectrolyte preferential interaction (Donnan) coefficient (ΓInline graphic) per polyion charge at any reduced axial charge density ξ. ΓInline graphic is the sum of the previously recognized low-salt limiting value and a salt-dependent contribution, analytically derived here in the range of low-salt concentrations. As an example of the application of this solution, we obtain an analytic expression for the derivative of the midpoint temperature of a nucleic acid conformational transition with respect to the logarithm of salt concentration (dTm/d ln[salt]) in terms of [salt] and nucleic acid structural quantities. This expression explains the experimental observation that this derivative is relatively independent of salt concentration but deviates significantly from its low-salt limiting value in the range 0.01–0.1 M.


The cylindrical nonlinear Poisson–Boltzmann (NLPB or PB) equation is widely used for calculating electrostatic potential around rod-like charged objects surrounded by mobile ions both in the theory of polyelectrolyte solutions (1, 2), in applications in plasma physics (3) and in colloid and surface sciences (4). In particular, the surface coulombic potential (and/or its distance dependence) of a charged polyion in an electrolyte solution is required for calculations of such thermodynamic properties as electrostatic free energy (5, 6), polyion-ligand binding constant (7, 8), and especially the fundamental thermodynamic quantity ΓInline graphic, the coulombic contribution to the preferential interaction coefficient (equivalent to the experimentally observable Donnan coefficient). This coefficient is required for interpretation of thermodynamic experiments on salt–polyion interactions and on effects of salt concentration ([salt], Cb) on polyion processes (1, 9). Numerical calculations of NLPB solution for the model of a long periodically charged polyion as an infinite charged cylinder characterized by only two structural quantities, reduced charge density ξ§ and radius a, are known to successfully describe experimentally measured thermodynamic properties of polyelectrolyte solutions (1). Monte Carlo simulations confirm the accuracy of the cylindrical PB equation in the presence of added univalent salt up to 0.1 M (10, 11). However, despite numerous studies devoted to solving the NLPB equation (2, 3), no sufficiently accurate analytic solution for the cylindrical NLPB equation was known at low- to moderate-salt concentration.

Solution of cylindrical NLPB equation is more challenging at low-salt (LS) concentration than at high [salt], where several useful accurate approximations for the potential, electrostatic free energy and preferential interaction coefficient are known (4, 1214). In the absence of added salt, the exact analytic solution of this equation exists in the form of elementary functions (“salt-free” solution) for the cell model (15). For an infinite space, Ramanathan (16) derived asymptotic approximation for NLPB potential, and MacGillivray and Winkelman (17) obtained matched asymptotic solution for a weakly charged polyion (ξ < 1). Other solutions of the cylindrical NLPB equation (18, 19) provide analytic expressions for the potential but require numerical calculations for constants. Although the NLPB potential in the presence of salt does not differ greatly from the “salt-free” potential (16, 20), the salt–polyelectrolyte preferential interaction coefficient ΓInline graphic depends exponentially on the coulombic potential at the polyion surface (21) and is very sensitive to small errors in the latter. We therefore sought a highly accurate analytic expression for the NLPB surface potential of a highly charged polyion accurate at low-to-moderate [salt] and dilute polyion concentration, expressible in elementary functions and useful in the analytical treatment of thermodynamic properties of polyelectrolyte–salt solutions.

Salt–nucleic acid preferential interaction coefficients, which characterize the net thermodynamic consequences of cation accumulation and anion exclusion in the vicinity of a nucleic acid polyion, have been measured by dialysis (22). Differences between preferential interaction coefficients of reactant(s) and product(s) of a nucleic acid process are the fundamental thermodynamic determinant of the strong dependence of the thermodynamics of that process on [salt] (1). Experimentally well characterized examples include the approximately linear dependences on logarithm of [salt] of the melting temperature Tm of nucleic acid conformational transitions (23) and of standard free energy change ΔGInline graphic = −RT ln Κobs (where Κobs is the binding constant) for binding of oligocations and other charged ligands to nucleic acids (24) (for more references, see ref. 1). Numerical calculations of preferential interaction coefficients, Donnan coefficient, or related quantities using the NLPB equation and Monte Carlo simulations have been reported in refs. 911 and 2528 and refs. therein. For extremely low but excess [salt], Gross and Strauss (26) deduced from the numerical NLPB solution and Manning (29) subsequently derived from the counterion condensation hypothesis the limiting law (LL) analytic expression for ΓInline graphic, ΓInline graphic = −(4ξ)−1 at ξ ≥ 1 and ΓInline graphic = −1/2 + ξ/4 at ξ < 1. More recently, analytic expressions for ΓInline graphic at high [salt] have been derived (6, 13). For single-stranded (ss) and double-stranded (ds) nucleic acids, significant deviations from the LL expressions were observed even at submicromolar [salt] (26, 30), but no analytic expression for ΓInline graphic was available at salt concentration from 10−6 to 0.1 M.

Previous numerical and approximate analytical solutions of the cylindrical NLPB equation show that the potential at the cylinder surface, ya, is very large when the surface charge density is high (i.e., ξ ≫ 1), especially at low [salt]. Benham (31) explained this behavior by showing the existence of a singular point of the Painleve equation, to which the cylindrical NLPB equation reduces when written in terms of coion concentration. The exact solution for the Painleve equation is available in the form of a power series in the vicinity of the singular point (31). This solution contains two unknown constants; analytic determination of these constants is required for the expansion at the singular point to have more than a theoretical significance and to serve as a basis for evaluation of the electrostatic potential around the polyion.

Here we present a LS asymptotic expansion of the exact solution of the cylindrical NLPB equation in the form of an asymptotic series in the small parameter ɛ−1, where ɛ−1 is the ratio of the polyion radius (a) to Debye length (κ−1), κ2 ≡ 2nbz2e2/DD0kBT, where nb is the bulk concentration (at r → ∞) of either cation or anion (in SI units), and z is the cation valency. The functional form of the zeroth order term in this expansion is analogous to the “salt-free” potential but with the modified Bessel function of the second kind, Κ0r), replacing the logarithm of the radial coordinate r. Two integration constants in this term are calculated from two boundary conditions. These constants, which depend on ɛ and ξ, determine the salt dependence of the preferential interaction coefficient, ΓInline graphic. We obtain an analytic expression for ΓInline graphic as the sum of the LL (low but excess salt) value, ΓInline graphic, and a [salt]-dependent term. Although results of this work are obtained for any symmetrical electrolyte, we discuss applications of the results to 1:1 salt, because neglecting ion correlation effects in the PB approach reduces its accuracy for multivalent ions (11, 32). The PB solution for multivalent ions may prove useful in extensions of the PB equation (e.g., ref. 33), where the potential is described by the cylindrical NLPB equation everywhere except in a layer near a polyion surface.

The LS asymptotic expansion allows one to calculate the position of the singular point of the PB solution. For the highly charged cylinder, (ξ ≫ 1), we show that the singular point is located in the polyion interior at a distance on the order of a/ξ from the cylinder surface.

The NLPB Potential and Its Relation to ΓInline graphic.

The NLPB equation describing the electric potential around a uniformly charged cylindrical polyion immersed in a symmetrical (z:z) electrolyte at infinite dilution of the polyion is

graphic file with name M15.gif 1
graphic file with name M16.gif 2
graphic file with name M17.gif 3

where yzeψ/kBT, σ* ≡ σeza/DD0kBT. Here, ψ and y are reduced and actual potentials, respectively; y′ = dy/dr; r is the radial coordinate; and σ* and σ are the reduced and actual surface charge densities of the polyion. For a cylindrical polyion, the surface charge density is σ = e/(2πab), where b is the axial charge separation (length per elementary charge). Then the reduced surface charge density, σ*, is related to the reduced axial charge density of the cylinder, ξ, as σ* = 2ξz. Setting the derivative of the potential equal to zero at infinity, Eq. 3, guarantees the electroneutrality of the entire space (3). Then y is the potential relative to infinity [y(∞) = 0].

The preferential interaction coefficient is calculated either as the integral of the local deficit in coion concentration over volume surrounding the polyion (11) or as the [salt] derivative of electrostatic free energy (6, 9). If the cylindrical NLPB potential is used, the integral of coion deficit can be evaluated in closed form, yielding an expression for the preferential interaction coefficient per polyion charge in terms of ξ and ɛ, and the surface potential, ya (21)

graphic file with name M18.gif 4

Eq. 4 provides the most direct route to calculating ΓInline graphic, because it requires knowledge only of the surface potential ya.

Results

We obtain the solution of the NLPB equation in the form of a zeroth order term of an asymptotic series in the small parameter ɛ−1, y = y0 + O(f(ɛ)) [for the detailed derivation and an estimation of the remainder of the asymptotic series, O(f(ɛ)), see Appendix A, which is published as supporting information on the PNAS web site, www.pnas.org], where the symbol O(f(ɛ)) means that the remainder of the asymptotic series is on the order of f(ɛ) as f(ɛ) → 0. The zeroth order term, y0, is analogous to the “salt-free” solution but with the modified Bessel function of the second kind, Κ0r) = Κ0(xɛ−1), instead of the logarithm of the radial coordinate (ln r):

graphic file with name M20.gif 5

where x = r/a is the reduced radial coordinate, γ = 0.5772 is the Euler–Mascheroni constant, and β and C are integration constants. In the limit ɛ−1 → 0, S(v) = sin v when ξ ≥ 1 and S(v) = sinh v when ξ < 1. For nonvanishing values of ɛ−1 > 0, corresponding conditions on ξ and ɛ−1 are presented in Table 1 in terms of ξ and the product β(ξ − 1)−1, which arises from the boundary condition at the cylinder surface. The two integration constants, β and C, are determined from electroneutrality and boundary conditions, Eqs. 23, and 24 (Appendix A, which is published as supporting information) and depend on ξ and ɛ. Eqs. 23 and 24 yield transcendental equations for constants β and C, which we obtain approximately for various ranges of ξ and β|ξ − 1|−1 specified in Table 1.

graphic file with name M21.gif 6a
graphic file with name M22.gif 6b
graphic file with name M23.gif
graphic file with name M24.gif 7a
graphic file with name M25.gif 7b
graphic file with name M26.gif 7c

Here α = eγ + ln 2 − γ = 1.897. We express remainders in Eqs. 6a, 7a, and 7b in terms of β and ξ for convenience; alternatively, they may be expressed using ɛ and ξ, because β = O((ln ɛ)−1) (Eqs. 7a and 7b).

Table 1.

Functional forms of low salt approximate analytic solution of cylindrical NLPB equation at different ranges of parameters ξ and β

ξ >1 >1 1 <1 <1
β|ξ − 1|−1 ≪1 ≫1 ≫1 ≅1






S(ν) sin ν sin ν sin ν sin ν sinh ν
Eq. for C 6a 6a 6a 6a 6b
Eq. for β 7a 7b 7b 7b 7c
Eq. for ΓInline graphic 10 11 11 11 12

The value of the surface potential can be expressed from Eq. 5 with the use of the boundary condition at the surface, Eq. 21, as

graphic file with name M27.gif 8

where β is given by Eqs. 7a7c, “+” refers to the solution with S(v) = sin v, and “−” refers to the case S(v) = sinh v. For a highly charged polyion in the limit of low [salt] (ɛ−1 → 0), β → 0 and the surface potential tends to its limiting value, y0,a,LL = ln[4ɛ2(ξ − 1)2], which was previously deduced from the PB LL numerical value of ΓInline graphic and Eq. 4 as a low-salt approximation for ya (21), and also from the asymptotic solution (16). When ξ < 1, β → 1 − ξ as ɛ−1 → 0, and the limiting value for the surface potential is y0,a,LL = ln[16ɛ2(ξ − 1)2] − 2(1 − ξ)(ln 2ɛ + C − γ). Accuracy of Eq. 8 and comparison to previously obtained expressions for the surface potential (16, 17) are discussed in Appendix A, which is published as supporting information.

Thermodynamic Applications.

Calculation of the preferential interaction coefficient ΓInline graphicby using the surface potential.

We use y0,a, Eq. 8, as an approximation for the surface potential, ya, in Eq. 4 (see Appendix A, which is published in supporting information), which yields the LS expression for ΓInline graphic

graphic file with name M31.gif 9

where “−” and “+” correspond to the solutions with S(v) = sin v and S(v) = sinh v, respectively. Because for a highly charged polyion β → 0 as [salt] decreases (ɛ−1 → 0), the first term in Eq. 9 [−(4ξ)−1] is the LS limiting value of ΓInline graphic, and −β2(4ξ)−1 is the salt-dependent term. When ξ < 1, the limiting value of β is (1 − ξ), which produces the LL value for the preferential interaction coefficient, ΓInline graphic = −1/2 + ξ/4, and the salt-dependent term, given below in terms of parameters ξ and ɛ

graphic file with name M34.gif 10
graphic file with name M35.gif 11
graphic file with name M36.gif 12

In addition to conditions on ξ specified here, we list conditions on ɛ−1 for Eqs. 1012 in Table 1.

Accuracy of the analytic expression for the preferential interaction coefficient ΓInline graphic.

For the model of an infinite uniformly charged cylindrical polyion, ΓInline graphic is a function of two parameters, ξ and ɛ. Fig. 1 shows a comparison of ΓInline graphic obtained from the LS asymptotic expansion, Eq. 10, and the numerical NLPB solution for dsRNA (A) and ssRNA (B) with structural parameters listed in Table 2. Fig. 1 A and B Inserts present the same comparison, but for (−4ξΓInline graphic − 1)−0.5 plotted as a function of log Cb, for which Eq. 10 predicts a linear dependence. As one can see from Fig. 1 A and B Inserts, the plots are linear for ɛ > 1. Therefore, Eq. 10 describes the salt dependence of the preferential interaction coefficient in the entire range ɛ > 1 with less than 7% error for both ss- and dsRNA. For both ss- and dsRNA, the error monotonically decreases as ɛ−1 → 0 for ɛ > 2.5. For 1 < ɛ < 2.5, the error is not monotonic, which indicates that the asymptotic result is on the margin of its applicability (ɛ ≅ 1), but the approximation is still acceptable for comparison with experimental data, for which the uncertainty is typically ±10%. At a given Cb, the LS asymptotic expression for ΓInline graphic (Eqs. 10 and 11) becomes more accurate as ξ decreases toward unity. (At Cb = 0.01 M the error for dsRNA (a = 10 Å and b = 1.44 Å) is 7%, whereas for the case of ξ = 1 for a polyion with structural parameters a = 10 Å and b = 7.14 Å, the error is 2%.) Accuracy of the analytic expressions for ya and ΓInline graphic for the case ξ ≤ 1 is summarized in Table 3 and Appendix A, which are published as Supporting Information on the PNAS web site.

Figure 1.

Figure 1

Comparison of ΓInline graphic from the LS approximation, Eq. 10 (solid line), the HS approximation, Eq. 14 (dotted line), and numerical results (dots) for dsRNA (A) and ssRNA (B). The error bars for the numerical values are not shown when they are within the symbols. Dashed line represents both LL value, ΓInline graphic, and preferential interaction coefficient calculated from the surface potential of ref. 16. (for description of Insets, see text.)

Table 2.

Structural parameters and ΓInline graphic for models of ss-, ds-, and tsRNA.

RNA a, Å b, Å ξ ΓInline graphic Cb(M) δΓInline graphic = δΓInline graphic δΓInline graphic max (%) δΓInline graphic max (%)
ss 7.5 3.2 2.23 ΓInline graphic = −0.112 − 4.42 (3.62 − ln Cb)−2 0.2  7 4
ds 11.8 1.44 4.96 ΓInline graphic = −0.0504 − 1.99 (1.59 − ln Cb)−2 0.05 7 4
ts 13 1.12 6.38 ΓInline graphic = − 0.0392 − 1.55 (1.27 − ln Cb)−2 0.04 6 4

Discussion

Low [Salt] Limiting Value and Salt Dependence of ΓInline graphic.

Eqs. 1012 provide expressions for ΓInline graphic as the sum of the LL value (ΓInline graphic = −(4ξ)−1, ξ ≥ 1, or ΓInline graphic = −1/2 + ξ/4, ξ < 1), which depends only on the polyion reduced axial (structural) charge density ξ, and a [salt]-dependent term. Previously, Anderson and Record (34) deduced from Eq. 4 and PB LL numerical results (26) that at sufficiently low salt concentration, the preferential interaction coefficient is represented as ΓInline graphic = ΓInline graphic(1 + σΓ), where σΓ is a salt-dependent correction to the LL value, vanishing as [salt] approaches zero. Our asymptotic expansion of PB potential rigorously proves this fact and provides an explicit expression for σΓ as a function of ɛ and ξ. For a highly charged polyion at very low [salt], the [salt]-dependent term σΓ decreases as (ln ɛ)−2.

Eqs. 1012 provide expressions for ΓInline graphic for the conditions on ξ and β listed in Table 1 arising from the expansion of the boundary condition at the cylinder surface. Because the solution, Eq. 5, is an asymptotic expansion at small ɛ−1, another condition for its application is ɛ ≫ 1. This condition is equivalent to the requirement that β be small for the solution with S(v) =sin v and β be close to (1 − ξ) for the solution with S(v) = sinh v. In practice, for a polyion with reduced charge density distinct from 1 (ξ < 0.5 or ξ > 2), the condition on β|ξ − 1|−1 is automatically satisfied if ɛ > 1, and for a polyion with ξ ≅ 1, Eq. 11 is applicable at not very low [salt] (see, for example, comparison of ΓInline graphic at ξ = 0.5 and ξ = 0.9 in Table 3, which is published as supporting information). Because nucleic acids have relatively large axial charge density (ξ > 2), Eq. 10 can be used as an accurate analytic expression for their preferential interaction coefficients in the entire [salt] range where ɛ > 1.

To reveal the dependence of ΓInline graphic on salt concentration and polyion structural parameters for a highly charged polyion, we replace ɛ in denominator in Eq. 10 by using the identity ɛ−2 ≡ κ2a2 ≡ 8CbξVu.

graphic file with name M52.gif 13

Here and below, Cb is in molar units (M), and the polyion cylindrical volume per charge is Vu in M−1 units. Substitution of structural parameters of ss-, ds-, and triple-stranded (ts) RNA in Eq. 10 yields expressions for ΓInline graphic, which are given in Table 2 together with corresponding RNA structural parameters.

Range of Applicability of Low [Salt] Expression for ΓInline graphic.

The solution derived in this paper is obtained as an asymptotic expansion in small parameter ɛ−1, and its accuracy increases as ɛ increases. The high-salt (HS) approximate expression for ΓInline graphic derived by Shkel et al. (13) is also an asymptotic expansion result valid in the opposite limit, ɛ → 0.

graphic file with name M56.gif 14

where p = ɛξ, q̃ =Inline graphic. Thus for every polyion, there is a [salt], which separates LS (ɛ > 1) and HS (ɛ < 1) regions, and where accuracy of both approximations is expected to decline. The value of [salt] corresponding to ɛ = 1 is different for polyions of different radii. Both expressions have a comparable error in the crossover range of salt concentrations, ɛ ≅ 1, and both errors increase with increasing ξ. Fig. 1 shows that the error for the HS expression increases more slowly, therefore the HS approximation can be used at salt concentrations where ɛ is slightly larger than 1. For the cylindrical models of ss-, ds-, and tsRNA, Table 2 presents the salt concentrations where δΓInline graphic = δΓInline graphic and maximum errors for both approximations in regions separated by this [salt]. The two approximations together describe ΓInline graphic with an uncertainty of <7% for ss-, ds-, and tsRNA.

Analytic Expression for ΔΓ for RNA Transitions at Low [Salt].

Preferential interaction coefficients are the fundamental determinant of the effect of salt concentration on the thermodynamics of nucleic acid processes. We discuss experimental studies of RNA conformational transitions (23) as an example of application of Eq. 10 to thermodynamic calculations, because these reactions involve a wide range of RNA axial charge densities (ξ ≅ 2 − 6.5, b ≅ 1 − 3.2 Å) and radii (a = 7.5 − 13 Å) and independently measured enthalpies of the transitions. Extensive numerical analysis of these transitions with NLPB cylindrical model is available for comparison (27). For the processes of step-wise denaturation of ts- and dsRNA polymers to the ss state, tsRNA → dsRNA + ssRNA and dsRNA → ssRNA, in the range from 0.01 to 0.1 M [salt] (23), the derivative of the melting temperature, Tm, with respect to the logarithm of [salt] is determined by the ratio ΔΓ/ΔH0, where ΔΓ is the stoichiometrically weighted difference in preferential interaction coefficients [Δ1Γu = (2/3)Γu,ds + (1/3)Γu,ss − Γu,ts for the first reaction and Δ2Γu = Γu,ss − Γu,ds for the second reaction], and ΔH0 is the transition enthalpy (both expressed per mol of nucleotide monomers). For proper comparison with experiment, one should take into account the excluded volume contributions to ΔΓu, ΔΓu = ΔΓInline graphic + ΔΓInline graphic, where ΔΓInline graphic = −6.022⋅10−4CbπΔ(a2b) and the values of a and b (in Å) are taken from Bond et al. (27).

The salt concentration range in experiments (23) (0.01 M < Cb < 0.1 M) coincides with the crossover region ɛ ≅ 1 for the two approximations: at 0.01 M, the LS approximation Eq. 10 is more accurate, and at 0.1 M the HS approximation Eq. 14 is more accurate.

We derive expressions for ΔΓInline graphic and its [salt] derivative in Appendix B, which is published as supporting information, for any polyion conformational transition in terms of changes in reduced charge density Δξ and volume per charge ΔVu for this process with coefficients depending only on [salt] and average values ξav and Vu,av for the process.

graphic file with name M65.gif 15
graphic file with name M66.gif 16

where Gξ = π2ξInline graphicfInline graphic(1 + 2favξavfInline graphic), GV = 2π2ξInline graphicVInline graphicfInline graphic, Gξ = 2π2ξInline graphicfInline graphic(1 + 3favξavfInline graphic), GV = 6π2ξInline graphicVInline graphicfInline graphic, f(ξ, Vu, Cb) = 1.715 −ln Cb − ln ξ −ln Vu + 2(ξ − 1)−1, fav = fav, Vu,av, Cb), and fav = (∂f/∂ξ)|ξ=ξav. Average values of ξ and Vu are determined by their minimal and maximal values in the reaction ξav = (ξmin + ξmax)/2, Vu,av = (Vu,max + Vu,min)/2. For the reaction tsRNA → dsRNA + ssRNA, ξmin = 2.23, ξmax = 6.38, ξav,1 = 4.3, for the reaction dsRNA → ssRNA, ξmin = 2.23, ξmax = 4.96, ξav,2 = 3.6. The largest, the smallest, and the average volumes for both reactions are Vu,min = 0.339 M−1, Vu,max = 0.378 M−1, and Vu,av = 0.359 M−1. Eqs. 15 and 16 are more accurate at low [salt], because neglected terms are proportional to some negative power of fav and fav increases with decreasing [salt]. At 0.01 M, Eq. 15 yields Δ1ΓInline graphic = −0.0455, which differs only by 5% from the value obtained from the original Eq. 13 (−0.0434). For the second transition, Eq. 15 yields Δ2ΓInline graphic = −0.077, which differs only by 3% from the value obtained from Eq. 13 (−0.0749).

In Fig. 2, we show Δ1Γu and Δ2Γu calculated from the LS and the HS approximations and from numerical NLPB solution. The experimental values of ΔΓu (27) are shown in the experimental range of salt concentration, 0.01–0.1 M, with the error of 15%. These error estimates assume average errors of 10% in ΔH0 (23) and in dTm/d log Cb.

Figure 2.

Figure 2

Difference in preferential interaction coefficients; comparison of the LS approximation (solid line), the HS approximation (dotted line), and numerical results (dots) for two RNA transitions: ts → ds + ss (lower curves) and ds → ss (upper curves). The errors of numerical values of ΔΓu are less than 2%.

For Δ1ΓInline graphic, the error of the LS approximation is less that 11% below Cb = 0.03 M, and the error of the HS approximation is less that 11% above Cb = 0.03 M. For Δ2ΓInline graphic, the error of the LS approximation is less that 12% at Cb < 0.02 M. Above Cb = 0.02 M the HS expression, Eq. 14 is a better approximation for Δ2ΓInline graphic, accurate within 13%.

Deviation of ΔΓInline graphic from ΔΓInline graphic.

Eq. 15 allows one to estimate the relative deviation of ΔΓInline graphic from its LL value. At low [salt], the leading term in ΔΓInline graphic − ΔΓInline graphic is π2ξInline graphicfInline graphicΔξ (because fav is large). This term predicts an increase in magnitude of ΔΓInline graphic− ΔΓInline graphic (Δξ < 0) with increasing salt concentration.

For the transitions with ξav ≥ 3.6, the deviation (ΔΓInline graphic − ΔΓInline graphic)/ΔΓInline graphic is less than 10% when fav > 17.5, i.e., at [salt] lower than 3⋅10−7 M. For both transitions considered above, Eq. 15 predicts that (ΔΓInline graphic − ΔΓInline graphic)/ΔΓInline graphic exceeds 25% when fav < 9, i.e., at [salt] higher than 0.001 M. Thus, in range of [salt] used in experimental measurements in ref. 23, the deviation of ΔΓ from the LL value is significant for both transitions and cannot be neglected in comparing with experiments.

Eq. 16 predicts that the derivative of ΔΓInline graphic becomes zero at the salt concentration determined by equation fav = 3ξav(Δξ)−1ΔVuVInline graphic− 3favξav. For reactions for which the first term can be neglected (ΔVu ≅ 0), the relationship for corresponding [salt] is ln Cb = −0.26 −lnξav + 2(ξav − 1)−1 − 6ξavav − 1)−2. Because the difference in ξav for different transitions is not large, the salt concentration where this occurs varies between 0.01 and 0.05 M (for ξav from 3.2 to 6.5). This [salt] is in the experimental range for both transitions analyzed here. The broad maximum of ΔΓInline graphic at this [salt] explains the experimentally observed linearity of Tm as a function of ln Cb.

Singular Points of the Solution.

The solution of the cylindrical NLPB equation has one or two singular points. The point x = 0 (r = 0) is always a singular point of the solution, because the term 2Κ0(xɛ−1) becomes infinite. For ξ ≥ 1, the position of the second singular point is determined by the relationship Κ0(xɛ−1) = Κ0−1) + (ξ − 1)−1. At ɛ−1 → 0, this equation yields r = ae−1/(ξ−1) + O−1ln ɛ). This point lies between the point r = 0 and the cylinder surface r = a and approaches the surface as ξ increases. As ξ → 1, this singular point approaches the coordinate origin (r = 0), and at ξ = 1 and ɛ−1 → 0, the two singular points coincide. Thus, at ɛ−1 = 0, ξ = 1 is a bifurcation point for the cylindrical NLPB equation [similar to the cell model solution (35)], which results in different functional forms of the (approximate) solution Eq. 5.

Benham (31) presented the expansion of the exact solution of the NLPB equation for coion concentration at the singular point, which for the potential is rewritten as

graphic file with name M102.gif 17

where, as above, x = r/a.

Series 17 satisfies the NLPB equation exactly, which can be verified by direct substitution of Eq. 17 into the NLPB equation. All coefficients An are uniquely expressed through two constants, x0 and A2, by induction (31). Constant x0 determines the location of the singular point. These two constants have to be determined from two boundary conditions. Because the expansion given by Eq. 17 is not valid at infinity, the boundary condition at infinity cannot be applied directly to Eq. 17.

The LS asymptotic solution of the NLPB equation, Eq. 5, provides approximate expressions for A2 and x0 when y0 is expanded at small (xx0) and compared with series 17. In the leading order with respect to ɛ−1, these expressions are:

graphic file with name M103.gif 18
graphic file with name M104.gif 19

If ξ ≫ 1, then the singular point is located at the distance on the order of aξ−1 from the cylinder surface and the order of magnitude of every term in the expansion Eq. 17 differs by a factor of ξ−1 from the previous one. Although the expansion Eq. 17 does not converge sufficiently rapidly for calculation of y, it provides a clear illustration of the behavior of the solution near the singular point. When r approaches the singular point, the potential increases as the logarithm of the distance to the singular point. Because at high polyion charge density (ξ ≫ 1) the singular point is close to the cylinder surface, the potential at the polyion surface is very large.

Other Solutions for the Surface Potential and ΓInline graphic at Low- to Moderate-Salt Concentration.

For a long time, the LL value (value at very low [salt]) of ΓInline graphicInline graphic = −(4ξ)−1, ξ ≥ 1 and ΓInline graphic = −1/2 + ξ/4, ξ < 1] obtained from numerical NLPB analysis (26) and independently from the counterion condensation hypothesis has been the only existing analytic expression for ΓInline graphic at low [salt]. The attempt to introduce a deviation from the LL value of ΓInline graphic due to exclusion of coions from the volume of the condensed layer by Manning (36) was found less satisfactory in explaining experimental data than numerical NLPB calculations (27). Several approximate NLPB analytic solutions for the potential at low salt concentrations are known, but they are unsatisfactory for the calculation of ΓInline graphic. Previous solutions in the presence of the salt (18 and 19), although analytic in functional form, require extensive numerical calculations to evaluate constants for each [salt] and polyion structural quantity. The leading-order approximation with respect to [salt] to the cylindrical NLPB potential in an infinite space in the presence of salt (16) is not sufficiently accurate for calculation of ΓInline graphic. It yields the LL value for the surface potential, and hence for ΓInline graphic, but does not produce the correct [salt] dependence of ΓInline graphic, as shown in Fig. 1 and discussed in Appendix A, which is published as supporting information. Another solution (17), derived by the matched asymptotic expansions method, was obtained for a weakly charged polyion only (ξ < 1). (See Table 3 and Appendix A, which are published as supporting information, for comparison of this solution (17) with Eq. 8 of the present work.) The LS approximate solution of the cylindrical NLPB equation (Eq. 5) presented here is obtained for any value of polyion charge density ξ and exists in the entire range of the radial coordinate (ra).

Conclusion

For a stiff polyion of either high or low charge density, Eq. 8 and the accompanying expressions for β (Eqs. 7a7c) provide analytic expressions for the [salt] dependence of the polyion surface potential ya, which are sufficiently accurate to calculate the coulombic contribution to the preferential interaction coefficient ΓInline graphic at all reduced polyion charge densities ξ and over a wide range of low-to-moderate [salt]. Eqs. 1012 are, to our knowledge, the first rigorously derived analytic expressions for the preferential interaction coefficient ΓInline graphic at low [salt]. These expressions show deviation of ΓInline graphic from its LL value with increasing [salt] and depend explicitly on structural quantities of the polyion (radius a, and charge separation b). Different functional forms of ya and ΓInline graphic are obtained depending on the value of ξ relative to unity and on salt concentration via β (Table 1). Previously, these behaviors were described analytically only under LL conditions, where the functional forms of ya and ΓInline graphic depend on the value of ξ relative to unity, a result attributed to counterion condensation but derived more generally from the NLPB equation without the hypothesis of counterion condensation (16, 35).

Eqs. 1012 are obtained in the LS limit (ɛ−1 → 0), complementary to the HS limit (ɛ → 0) considered in Shkel et al. (13). The two approximations provide explicit analytic expressions for the preferential interaction coefficient ΓInline graphic in the entire range of salt concentration in the context of NLPB approach. The accuracy of both solutions is sufficient to explain an experimentally measured derivative of the melting temperature for RNA transitions with respect to the logarithm of [salt].

Analytic expressions Eqs. 8, 1012 generalize numerical data for PB surface potential and preferential interaction coefficients in the form of explicit, accurate, easy-to-use relationships and eliminate the need for numerical calculations for the cylindrical NLPB model in the future. The calculations of other thermodynamic properties of electrolyte solutions (electrostatic free energy, activity coefficient, osmotic coefficient, etc.) now can be readily performed. The solution reported here also provides a basis for the incorporation of local details at the polyion surface to examine thermodynamic consequences of ion correlations (33) or DNA structural details (9).

Supplementary Material

Supporting Information

Acknowledgments

We thank Dr. Charles Anderson for helpful comments. This work was supported by National Institutes of Health Grant GM47022 to M.T.R.

Abbreviations

NLPB

nonlinear Poisson-Boltzmann

LL

limiting law

[salt]

salt concentration

ss

single-stranded

ds

double-stranded

LS

low salt

HS

high salt

ts

triple stranded

Footnotes

This paper was submitted directly (Track II) to the PNAS office.

§

ξ ≡ e2/4πDD0kBTb (ξ ≅ 7.14/b near 25°C°), where b is the average axial charge separation of a polyion, e is the proton charge, D and D0 are the dielectric constants of the bulk solution and vacuum, respectively, kB is the Boltzmann constant, and T is temperature. ξ is inversely proportional to b in water, because DT ≅ const over a wide range of temperature.

In the PB approximation, concentrations of positively (C+), and negatively (C) charged ions are related to potential and to each other through the bulk concentration Cb (at y = 0): C± = Cbexp(∓y), C+C = CInline graphic.

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