Table 2.
List of pleiotropic and tightly linked MTA clusters for targeted traits
| S. No | SNP | Chr | Common MTAs | Type of MTA cluster | Physical distance (kb) | Trait combinations |
|---|---|---|---|---|---|---|
| 1 |
UChr1_34313806 UChr1_35240947 |
1 | qLER_1, qGP_1 | Tightly linked MTA cluster | 927.14 | YLD + QLT |
| 2 | UChr2_29709549 | 2 | qNP_2, qNT_2 | Pleiotropic MTA | 0.0 | YLD |
| 3 |
UChr4_18635459 UChr4_19708000 |
4 | qGP_4, qSPY_4 | Tightly linked MTA cluster | 1072.5 | YLD |
| 4 |
UChr4_18635459 UChr4_17481870 |
4 | qGP_4, qNFG_4 | Tightly linked MTA cluster | 1153.5 | YLD |
| 5 |
UChr4_22077270 UChr4_21038673 |
4 | qGC_4, qHP_4 | Tightly linked MTA cluster | 1038.7 | QLT |
| 6 | UChr5_20185460 | 5 | qLBR_5, qGL_5, qGLAC_5 | Pleiotropic MTA | 0.0 | QLT |
| 7 |
UChr5_20185460 UChr5_20388634 |
5 | qLBR_5, qGL_5, qGLAC_5, qASV_5 |
Pleiotropic MTA and Tightly linked MTA cluster |
203.1 | QLT |
| 8 | UChr6_6283316 UChr6_6327999 | 6 | qASV_6.2, qASV_6.3 | Tightly linked MTA cluster | 44.7 | QLT |
| 9 |
UChr6_6717918 UChr6_6327999 |
6 | qASV_6.1, qASV_6.3 | Tightly linked MTA cluster | 389.9 | QLT |
| 10 |
UChr6_7702617 UChr6_6717918 |
6 | qASV_6.4, qASV_6.1 | Tightly linked MTA cluster | 984.7 | QLT |
| 11 |
UChr6_13469745 UChr6_12283093 |
6 | qGL_6/qLBR_6.1& qGC_6.2 | Tightly linked MTA cluster | 1186.6 | QLT |
| 12 | UChr6_13469745 | 6 | qGL_6, qLBR_6.1 | Pleiotropic MTA | 0.0 | QLT |
| 13 |
UChr6_14083152 UChr6_13469745 |
6 | qLBR_6.2, qGL_6/qLBR_6.1 | Tightly linked MTA cluster | 613.4 | QLT |
| 14 |
UChr6_23358790 UChr6_23212242 |
6 | qBS_6.2 & qBS_6, qNFG_6 | Tightly linked MTA cluster | 146.5 | DR + YLD |
| 15 |
UChr7_29372206 UChr7_29063682 UChr7_28875695 |
7 | qGL_7, qHP_7, qSPY_7 & qSPY_7.2 | Tightly linked MTA cluster | 497 | YLD + QLT |
| 16 | UChr9_924504 | 9 | qGL_9, qGLAC_9 | Pleiotropic MTA | 0.0 | QLT |
| 17 |
UChr9_9937779 UChr9_8923188 |
9 | qGB_9.2, qGB_9.1 | Tightly linked MTA cluster | 1014.6 | QLT |
| 18 |
UChr9_9937779 UChr9_10308881 UChr9_10335879 |
9 | qGB_9.2, qLBR_9, qGC_9 | Tightly linked MTA cluster | 398 | QLT |
| 19 | UChr10_23038717 | 10 | qGL_10, qLBR_10 | Pleiotropic MTA | 0.0 | QLT |
| 20 |
UChr10_23038717 UChr10_23018420 |
10 | qLBR_10&qGL_10, qNCG_10 | Pleiotropic MTA and Tightly linked MTA cluster | 20.3 | YLD + QLT |
| 21 |
UChr10_13980725 UChr10_13728468 |
10 | qLER_10, qSPY_10 | Tightly linked MTA cluster | 252.3 | YLD + QLT |
| 22 |
UChr11_19883308 UChr11_19337793 |
11 | qGB_11, qGLAC_11 | Tightly linked MTA cluster | 545.5 | QLT |
| 23 |
UChr12_19479274 UChr12_19545378 |
12 | qLBR_12.1, qLBR_12.2, qLBR_12.3 | Tightly linked MTA cluster | 334 | QLT |
| 24 |
UChr12_17897107 UChr12_17597775 |
12 | qGP_12, qHP_12 | Tightly linked MTA cluster | 299.3 | YLD + QLT |