IS	Immune System
IR	Immune Response
PAMPs	Pathogen-associated Molecular Patterns
DAMPs	Damage-associated Molecular Patterns
TLR	Toll-like Receptors
FBR	Foreign Body Response
ISO	International Organization for Standardization
MS	Mass Spectrometry
DDA	Data-dependent Acquisition
DIA	Data-independent Acquisition
PRM	Parallel Reaction Monitoring
SRM	Selected Reaction Monitoring
LC	Liquid Chromatography
MALDI	Matrix-assisted Laser Desorption/Ionization
ESI	Electrospray Ionization
TOF	Time Of Flight
Q	Quadrupole
ICR	Ion Cyclotron Resonance
MSI	Mass Spectrometry Imaging
IM-MS	Ion Mobility Mass Spectrometry
TMT	Tandem Mass Tag
NAPPA	Nucleic Acid Programmable Protein Array
PEG	Polyethylene glycol
RGD	Arginine-glycine-aspartic acid
ECM	Extracellular matrix
MSC	Mesenchymal Stem Cells
HPLC	High-performance liquid chromatography
ABPP	Activity-based Protein Profiling
PTM	Post-translational Modifications
PISA	Proteome Integral Solubility Alteration
FDR	False Discovery Rate